Table 1.
Author | Year | Total N | Cases | Controls | Replication Sample Cases | Replication Sample Control | Meta-analysis sample | Ancestry | MDD DEFINITION | GWAS hits | Putative Genes DCC or Netrin | SNP - location | Functional consequence | Notes |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Okbay et al.(105) | 2016 | 75306 | 16471 | 58835 | 105739 | E | Frequency, in the past two-weeks, in which the respondent experienced feelings of unenthusiasm or disinterest and feelings of depression or hopelessness. | 2 | DCC | rs62100776 | intron variant | |||
Smith et al.(112) | 2016 | 91370 (47196 ♀ /44174 ♂) | 15346 | E | Eysenck Personality Questionnaire-Revised (EPQ R-S) Short Form’s Neuroticism scale | 9 | Netrin-1 SNP, rs8081460, was associated with neuroticism in the UK Biobank sample. This SNP effect did not replicate in independent samples | |||||||
Zeng et al.(102) | 2017 | 6455 | 1123 | 5332 | 9240 | 9519 | E | Structured Clinical Interview | 1 | Netrin 1 | Polygenic risk scores (PRSs) calculated for netrin-1 pathway more accurately predicted MDD in one of the cohorts compared with PRS calculated for the whole genome | |||
Dunn et al.(99) | 2016 | 0 | 7179 AA, 3138 Hs | AA, Hs | Center for Epidemiological Studies of Depression Scale (CES-D) | 0 | The top signals in AA were rs73531535 (located 20kb from GPR139, p=5.75×10–8) and rs75407252 (intronic to CACNA2D3, p=6.99×10–7). In Hs, the top signals were rs2532087 (located 27kb from CD38, p=2.44×10–7) and rs4542757 (intronic to DCC, p=7.31×10–7). | |||||||
Ward et al.(108) | 2017 | 113968 | 53525 | 60443 | Mood instability measured by a single question: ‘Does your mood often goes up and down? | 4 | DCC | rs8084280 | intron variant | |||||
Wray et al.(107) | 2018 | 480359 | 135458 | 344901 | E | Diagnostic Interview. Cases were required to meet international consensus criteria (DSM-IV, ICD-9, or ICD-10 | 44 | DCC | rs11663393 | intron variant | ||||
Amare et al. (140) | 2019 | 336753 | 90150 | 246603 | NR | NR | E Ch ♀ | Self-reported MDD (srMDD), recurrent MDD(rMDD), | 1 | rMDD significant SNP was not replicated in the replication sample | ||||
Howard et al. (141) | 2019 | 807553 | 246363 | 561190 | 414055 | E | Clinical interview and broader criteria | 102 | DCC | rs7227069 | intron variant | |||
Arnau-Soler et al.(109) | 2019 | 4919 (2990 ♀ /1929 ♂) | 99057 | E/Sc | Questionnaire and psychological assessment | 0 | Post-GWAS gene-based test identified six genes assocaited with the Patient Health Questionnaire validated to screen mental illness: DCC, ACSS3, DRD2, STAG1, FOXP2 and KYNU | |||||||
Barbu et al.(103) | 2019 | 6420 | E | 0 | PRS from the Netrin-1 signaling pathway is significantly and specifically associated with white matter integrity in thalamic radiations, namely lower fractional anisotropy, and higher mean diffusivity | |||||||||
Roberson-Nay et al.(114) | 2018 | 150 pairs of MZ twins | E | DSM-V criteria for MD | 0 | 0 | 0 | Identified altered methylation in Netrin-1. Gene enrichment analyses implicated genes related to neuron structures and neurodevelopmental processes including cell-cell adhesion genes (e.g., CDHs, PCDHAs, PCDHA1C/2C). Genes previously implicated in mood and psychiatric disorders as well as chronic stress (e.g., HDAC4, NRG1) | ||||||
Strawbridge et al.(110) | 2019 | 122822 | 39265 | 83557 | 15735 & 23923 | 84499 & 84167 | E | Questionnaire to assess suicidality phenotype | 3 | The gene-based analysis was used to identify genes containing potential composite association signals that were not identified by the individual SNP analysis, but which might nevertheless contribute to biological mechanisms underlying suicidality. The gene-based analysis highlighted CNTN5, ADCK3/COQ8A, CEP57, and FAM76B and DCC for suicidality. EIF4A1 and SENP3 and DCC for deliberate self-harm | ||||
Ward et al.(106) | 2019 | 375275 | Anhedonia | 11 | DCC | rs72923287 | intron variant | PRS for anhedonia was associated with poorer brain white matter integrity, smaller total grey matter volume, and smaller volumes of brain regions linked to reward and pleasure processing, including nucleus accumbens, caudate, and medial frontal cortex. A locus in the DCC gene was the most significant hit associated with anhedonia | ||||||
Lee et al.(115) | 2019 | 727126 | 232964 | 494162 | E | Cross psychiatric disorders | 23 associated with at least four of the disorders | DCC | rs8084351 | intron variant | The region surrounding SNP rs8084351 at the gene DCC featured the most pleiotropic association. This region showed association with all eight psychiatric dissordes studied (MD, SCZ, BIP, ADHD, ASD, TS, ANO, OCD) |
E=european
Sc=Scottish
rMDD=recurrent major depression
ASD=Autism spectrum disorder
AA= African American
BIP=Bipolar Disorder
MD= Major Depression
TS=tourette syndrome
Hs: Hispanic
TS= two samples
SCZ= Schizophrenia
ANO=anorexia nervosa
Ch= Chinese
PRS=Poygenetic Risk Score
ADHD= Attention deficit hyperactivity disorder
OCD=Obsessive–compulsive disorder