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. Author manuscript; available in PMC: 2021 Oct 15.
Published in final edited form as: Biol Psychiatry. 2020 May 11;88(8):611–624. doi: 10.1016/j.biopsych.2020.04.025

Table 1.

Summary of published GWAS linking single nucleotide polymorphisms within the NETRIN1/DCC signaling pathway with MDD, Depressive Symptoms or Depression-associated traits. Human genes are designated in italicized uppercase letters.

Author Year Total N Cases Controls Replication Sample Cases Replication Sample Control Meta-analysis sample Ancestry MDD DEFINITION GWAS hits Putative Genes DCC or Netrin SNP - location Functional consequence Notes
Okbay et al.(105) 2016 75306 16471 58835 105739 E Frequency, in the past two-weeks, in which the respondent experienced feelings of unenthusiasm or disinterest and feelings of depression or hopelessness. 2 DCC rs62100776 intron variant
Smith et al.(112) 2016 91370 (47196 ♀ /44174 ♂) 15346 E Eysenck Personality Questionnaire-Revised (EPQ R-S) Short Form’s Neuroticism scale 9 Netrin-1 SNP, rs8081460, was associated with neuroticism in the UK Biobank sample. This SNP effect did not replicate in independent samples
Zeng et al.(102) 2017 6455 1123 5332 9240 9519 E Structured Clinical Interview 1 Netrin 1 Polygenic risk scores (PRSs) calculated for netrin-1 pathway more accurately predicted MDD in one of the cohorts compared with PRS calculated for the whole genome
Dunn et al.(99) 2016 0 7179 AA, 3138 Hs AA, Hs Center for Epidemiological Studies of Depression Scale (CES-D) 0 The top signals in AA were rs73531535 (located 20kb from GPR139, p=5.75×10–8) and rs75407252 (intronic to CACNA2D3, p=6.99×10–7). In Hs, the top signals were rs2532087 (located 27kb from CD38, p=2.44×10–7) and rs4542757 (intronic to DCC, p=7.31×10–7).
Ward et al.(108) 2017 113968 53525 60443 Mood instability measured by a single question: ‘Does your mood often goes up and down? 4 DCC rs8084280 intron variant
Wray et al.(107) 2018 480359 135458 344901 E Diagnostic Interview. Cases were required to meet international consensus criteria (DSM-IV, ICD-9, or ICD-10 44 DCC rs11663393 intron variant
Amare et al. (140) 2019 336753 90150 246603 NR NR E Ch ♀ Self-reported MDD (srMDD), recurrent MDD(rMDD), 1 rMDD significant SNP was not replicated in the replication sample
Howard et al. (141) 2019 807553 246363 561190 414055 E Clinical interview and broader criteria 102 DCC rs7227069 intron variant
Arnau-Soler et al.(109) 2019 4919 (2990 ♀ /1929 ♂) 99057 E/Sc Questionnaire and psychological assessment 0 Post-GWAS gene-based test identified six genes assocaited with the Patient Health Questionnaire validated to screen mental illness: DCC, ACSS3, DRD2, STAG1, FOXP2 and KYNU
Barbu et al.(103) 2019 6420 E 0 PRS from the Netrin-1 signaling pathway is significantly and specifically associated with white matter integrity in thalamic radiations, namely lower fractional anisotropy, and higher mean diffusivity
Roberson-Nay et al.(114) 2018 150 pairs of MZ twins E DSM-V criteria for MD 0 0 0 Identified altered methylation in Netrin-1. Gene enrichment analyses implicated genes related to neuron structures and neurodevelopmental processes including cell-cell adhesion genes (e.g., CDHs, PCDHAs, PCDHA1C/2C). Genes previously implicated in mood and psychiatric disorders as well as chronic stress (e.g., HDAC4, NRG1)
Strawbridge et al.(110) 2019 122822 39265 83557 15735 & 23923 84499 & 84167 E Questionnaire to assess suicidality phenotype 3 The gene-based analysis was used to identify genes containing potential composite association signals that were not identified by the individual SNP analysis, but which might nevertheless contribute to biological mechanisms underlying suicidality. The gene-based analysis highlighted CNTN5, ADCK3/COQ8A, CEP57, and FAM76B and DCC for suicidality. EIF4A1 and SENP3 and DCC for deliberate self-harm
Ward et al.(106) 2019 375275 Anhedonia 11 DCC rs72923287 intron variant PRS for anhedonia was associated with poorer brain white matter integrity, smaller total grey matter volume, and smaller volumes of brain regions linked to reward and pleasure processing, including nucleus accumbens, caudate, and medial frontal cortex. A locus in the DCC gene was the most significant hit associated with anhedonia
Lee et al.(115) 2019 727126 232964 494162 E Cross psychiatric disorders 23 associated with at least four of the disorders DCC rs8084351 intron variant The region surrounding SNP rs8084351 at the gene DCC featured the most pleiotropic association. This region showed association with all eight psychiatric dissordes studied (MD, SCZ, BIP, ADHD, ASD, TS, ANO, OCD)

E=european

Sc=Scottish

rMDD=recurrent major depression

ASD=Autism spectrum disorder

AA= African American

BIP=Bipolar Disorder

MD= Major Depression

TS=tourette syndrome

Hs: Hispanic

TS= two samples

SCZ= Schizophrenia

ANO=anorexia nervosa

Ch= Chinese

PRS=Poygenetic Risk Score

ADHD= Attention deficit hyperactivity disorder

OCD=Obsessive–compulsive disorder