Table 2.
The 25-SNP KIT haplotype conserved in all yak with white markings (trim or royal) and corresponding haplotypes associated with solid black coat color
| Position (bp) Chromosome 6 (UMD3.1) | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71834186 | 71844222 | 71855663 | 71863243 | 71868653 | 71871905 | 71872160 | 71877765 | 71887903 | 71902723 | 71908561 | 71913504 | 71913721 | 71915529 | 71926526 | 71937845 | 71945528 | 71952915 | 71991742 | 71993435 | 72018821 | 72028441 | 72130781 | 72182635 | 72222821 | Frequency (black haplotypes) | |
| Trim | A | C | T | G | C | A | T | C | T | G | T | C | A | A | A | T | A | A | T | A | C | G | T | G | C | |
| Qiu et al. 2012 | A | C | T | G | C | A | T | C | T | G | T | C | A | A | A | T | A | A | T | G | C | G | T | G | C | |
| Black 1 | T | T | C | A | T | G | C | T | C | C | C | G | G | T | G | G | G | G | C | G | T | A | A | A | G | 0.080 |
| Black 2 | T | T | C | A | T | G | C | T | C | C | C | G | G | T | G | G | G | G | C | G | T | G | A | A | G | 0.006 |
| Black 3 | T | T | C | A | T | A | C | T | C | C | C | G | G | T | G | G | A | G | C | G | T | A | A | A | G | 0.045 |
| Black 4 | T | T | C | A | T | G | C | T | C | C | C | G | G | T | G | G | A | G | C | G | T | G | A | A | G | 0.006 |
| Black 5 | T | T | C | A | T | A | C | T | C | C | C | G | G | T | G | G | A | G | C | G | T | G | A | A | G | 0.396 |
| Black 6 | T | T | C | A | T | G | C | T | C | C | C | G | G | T | G | G | A | G | C | G | T | A | A | A | G | 0.466 |
| Black 7 | T | T | C | A | T | G | C | T | C | C | C | G | G | T | G | G | G | G | C | G | T | G | A | A | C | 0.006 |
| Black 8 | A | T | C | A | T | G | C | T | C | C | C | G | G | T | G | G | G | G | C | G | T | A | A | A | G | 0.006 |
| 70170826 | 70180862 | 70192303 | 70199883 | 70205292 | 70208544 | 70208799 | 70214407 | 70224524 | 70239336 | 70245173 | 70250117 | 70250334 | 70252142 | 70263138 | 70274457 | 70282136 | 70289525 | 70328352 | 70330045 | 70355431 | 70365049 | 70467047 | 70518910 | 70557522 | ||
| Position (bp) Chromosome 6 (ARS-UCD1.2) | ||||||||||||||||||||||||||
The second haplotype for the presumed trim yak reported in Qiu et al. (2012) is identical to black Haplotype 8. The frequency that each 25-SNP haplotype associated with solid coat color was observed, is given and the boundaries of the 10-SNP conserved region are shown in bold.