Table 4.
Repeat type and proportion of SSRs.
Searching item | Number of repeat types | Major repeat type | Percentage |
---|---|---|---|
Dinucleotide | 4 | AG/CT (3788, 34.38%), AT/AT (774, 7.02%), AC/GT (570, 5.17%), CG/CG (25, 0.23%) | 3.08 |
Trinucleotide | 10 | AAG/CTT (1138, 10.33%), AGC/CTG (1078, 9.78%), AGG/CCT (735, 6.67%), ACC/GGT (616, 5.59%), AAT/ATT (528, 4.79%) | 7.69 |
Tetranucleotide | 23 | AAAG/CTTT (72, 0.65%), AGGG/CCCT (66, 0.60%), AAAT/ATTT (58, 0.53%), AAGG/CCTT (25, 0.23%), ACAT/ATGT (16, 0.15%) | 17.69 |
Pentanucleotide | 19 | AAAAG/CTTTT (22, 0.20%), AGAGG/CCTCT (17, 0.15%), AAGAG/CTCTT (10, 0.09%), AAAAT/ATTTT (7, 0.06%), AGGGG/CCCCT (6, 0.05%) | 14.62 |
Hexanucleotide | 74 | AACAGC/CTGTTG (12, 0.11%), AAATAC/ATTTGT (8, 0.07%), ACCGCC/CGGTGG (7, 0.06%), AAAAAT/ATTTTT (6, 0.05%), ACCATC/ATGGTG (6, 0.05%) | 56.92 |