Table 4.
The SE-ncRNAs associated databases
| Database | Functions of database | Website | Ref. |
|---|---|---|---|
| dbSUPER | The first integrated interactive database of SEs in transcriptional regulation of cellular identities and diseases | http://bioinfo.au.tsinghua.edu.cn/dbsuper/ | 136 |
| SEA | Includes SEs in multiple species and their roles in cellular identities | http://sea.edbc.org | 137 |
| SEdb | A wide range of human genome SEs and their potential roles in gene regulation | http://www.licpathway.net/sedb | 138 |
| SEanalysis | Provides a comprehensive analysis of SE-associated regulatory networks, the relationship between SE-associated genes and TFs | http://licpathway.net/SEanalysis | 139 |
| SEA version 3.0 | A comprehensive extension and update of the Super-Enhancer archive. | http://sea.edbc.org | 140 |
| DEEPSEN | A convolutional neural network based method for super-enhancer prediction. | https://github.com/1991Troy/DEEPSEN | 141 |
| dbCoRC | A database of core transcriptional regulatory circuitries modeled by H3K27ac ChIP-seq signals. | http://dbcorc.cam-su.org | 142 |
| Cistrome Cancer | A comprehensive resource for predicted transcription factor (TF) targets and enhancer profiles and "super-enhancer" target genes | http://cistrome.org/CistromeCancer/ | 143 |
| SELER | Transcriptional regulation of SE-lncRNAs in human tumors | http://www.seler.cn | 144 |
| TRCirc | Mainly includes transcription of circRNAs and partial SE-circRNAs | http://www.licpathway.net/TRCirc | 145 |