Table 1.
Details of three previous GBM transcriptomic studies from the GEO repository and TCGA.
Dataset ID | GBM | Normal | Experiment type | Contributors | Download |
---|---|---|---|---|---|
GSE4290 | 77 | 23 | Expression profiling by array | Sun et al. (22) | ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE4nnn/GSE4290/matrix/GSE4290_series_matrix.txt.gz |
GSE16011 | 159 | 8 | Expression profiling by array | Gravendeel et al. (23) | ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE16nnn/GSE16011/matrix/GSE16011_series_matrix.txt.gz |
GDC TCGA Glioblastoma (GBM) | 155 | 5 | Expression profiling by RNA-seq | Genomic data commons | https://xenabrowser.net/datapages/?dataset=TCGA-GBM.htseq_fpkm.tsv&host=https%3A%2F%2Fgdc.xenahubs.net&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443 |