Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2020 Aug 18;10(10):3515–3531. doi: 10.1534/g3.120.401405

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

Copyright © 2020 Fountain et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Whole genome alignment and structural confirmation using optical mapping. A. Dotplot showing a comparison between AF13 and NRRL3357. A large insertion (310 Kb) can be observed on Chromosome 1. B. Comparison between AF13 and A. oryzae RIB40 at the insert position (enlarged in C) clearly showed alignment to a region on A. oryzae Chromosome 8 for the insertion. Otherwise, the genomes shared a similar structure with the exception of a translocation on Chromosomes 6 and 2. D. Bionano optical mapping reads (blue) aligned to assembled PacBio contigs (green) show sufficient read depth in the region to confirm the presence of the insertion and validate the AF13 assembly.