Table 4. - Comparison in length between v1.0 (reference) pseudomolecules and v2.0 (Hi-C) super-scaffolds. Number of genes predicted from v1.0 and v2.0 are shown and compared. The number of genes reported in Acquadro et al. (2017) (annotation v1.1) predicted on the v1.0 assembly are also shown.

	Size assembly (bp)				N° Genes
Chromosome	v2.0	v1.0	Δ (bp)	Ratio (%) v2.0/v1.0	v2.0	v1.1	v1.0	Ratio (%) v2.0/v1.0
1	53,988,940	49,754,839	4,234,101	9%	2,881	2,692	2,630	10%
2	75,886,343	70,441,430	5,444,913	8%	2,696	2,502	2,351	15%
3	69,604,505	40,297,365	29,307,140	73%	2,261	1,942	1,868	21%
4	23,740,492	20,164,318	3,576,174	18%	1,104	991	962	15%
5	63,544,927	37,196,517	26,348,410	71%	1,967	1,723	1,640	20%
6	24,383,717	20,634,051	3,749,666	18%	1,084	956	903	20%
7	18,502,611	15,568,887	2,933,724	19%	1,003	933	907	11%
8	44,609,785	25,947,084	18,662,701	72%	1,529	1,250	1,196	28%
9	17,815,532	18,344,014	−528,482	−3%	1,061	1,047	1,006	5%
10	31,669,976	29,133,143	2,536,833	9%	1,609	1,516	1,436	12%
11	34,212,861	22,016,825	12,196,036	55%	1,611	1,459	1,453	11%
12	44,809,927	39,693,055	5,116,872	13%	1,590	1,473	1,404	13%
13	44,877,405	41,551,399	3,326,006	8%	2,077	1,873	1,801	15%
14	28,499,371	14,487,748	14,011,623	97%	1,003	669	646	55%
15	38,772,909	21,275,025	17,497,884	82%	1,751	1,501	1,466	19%
16	30,156,653	21,933,510	8,223,143	37%	1,193	964	949	26%
17	47,245,614	37,737,787	9,507,827	25%	1,655	1,349	1,277	30%
Unplaced scaffold	33,892,403	199,160,669	−165,268,266	−83%	557	3,470	2,994	−81%
Chromosomes	692,321,568	526,176,997	+166,144,571	32%	28,075	24,840	23,895	17%
Total assembled	726,213,971	725,337,666	876,305	0.12%	28,632	28,310	26,889	6%