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. 2020 Aug 16;21(10):e47533. doi: 10.15252/embr.201847533

Table 1.

Primer sequences and reaction conditions of qRT–PCR or PCR

Gene name Primer (5′–3′) Accession no. Annealing temperature (°C)
qRT–PCR
 GAPDH F: ctc att tcc tgg tat gac aac ga NM_001289746.1 60
R: ctt cct ctt gtg ctc ttg ct
 OCT4 F: ctg ggt tga tcc tcg gac ct NM_002701.4 60
R: cac aga act cat acg gcg gg
 NANOG F: aaa gaa tct tca cct atg cc NM_024865.2 60
R: gaa gga aga gga gag aca gt
 SOX2 F: ggg aaa tgg aag ggg tgc aaa aga gg NM_003106.3 60
R: ttg cgt gag tgt gga tgg gat tgg tg
 KLF4 F: att acc aag agc tca tgc ca NM_004235.4 60
R:cct tga gat ggg aac tct ttg
 REX1 F: ttt acg ttt ggg agg agg NM_174900.3 60
R: gtg gtc agc tat tca gga g
 DPPA3 F: aaa gct tcc gat aga ggg ga NM_199286.3 60
R: tgc tca ccg aag aaa att cc
 TBX3 F: ttt gaa gac cat gga gcc cg NM_005996.3 60
R: aca ttc gcc ttc ccg act tg
 KLF2 F: ggc aag acc tac acc aag ag NM_016270 60
R: cac aga tgg cac tgg aat gg
 KLF5 F: cct ggt cca gac aag atg tga NM_001730 60
R: gaa ctg gtc tac gac tga ggc
 DPPA5 F: gtc gtg gtt tac ggc tcc tat NM_001025290 60
R: ggc aag ttt gag cat ccc tc
 MAEL F: ttg ctg atg cca tcc ctt act NM_032858 60
R: agctgacatatctggaggtgaa
 HORMAD1 F: gcc cag ttg cag agg act c NM_001199829 60
R: tct tgt tcc ata agc gca ttc t
 TFCP2L1 F: cag ccc gag cac tac aac c NM_014553 60
R: ctc cca gct tcc gat tct cc
 SOX1 F: cac aac tcg gag atc agc aa NM_005986.2 60
R: ggt act tgt aat ccg ggt gc
 PAX6 F: gtc cat ctt tgc ttg gga aa NM_001127612 60
R: tag cca ggt tgc gaa gaa ct
 TUBB3 F: gta tcc cga ccg cat cat NM_006086 60
R: tct cat ccg tgt tct cca
 NESTIN F: tcc agg aac gga aaa tca ag NM_006617.1 60
R: gcc tcc tca tcc cct act tc
 GATA4 F: cct gtc atc tca cta cgg NM_002052.3 60
R: gct gtt cca aga gtc ctg
 BRA F: aat tgg tcc agc ctt gga at NM_003181.2 60
R: cgt tgc tca cag acc aca
 CTNT F: atg atg cat ttt ggg ggt ta NM_000364.2 60
R: cag cac ctt cct cct ctc ag
 AFP F: aaa tgc gtt tct cgt tgc tt NM_001134.1 60
R: gcc aca ggc caa tag ttt gt
 FOXA2 F: gga gcg gtg aag atg gaa NM_021784.4 60
R: tac gtg ttc atg ccg ttc at
 SOX17 F: ctc tgc ctc ctc cac gaa NM_022454.3 60
R: cag aat cca gac ctg cac aa
 DNMT3β F: tcc cag ctc tta cct tac ca NM_001207056.1 60
F: aaa ctc ctt ccc atc ctg ata ctc
 TET1 F: cca acc tta ggg agt aac act g NM_030625.2 60
R: ggg agt gct gct tct ttc tg
 DNMT3L F: atg aag tca agg cta acc agc NM_175867 60
R: cgt cat cgt cgt aca gga aga g
 KLF17 F: gtctttcttccgttctgatgag NM_173484.3 60
R: ttcttcattcacctaaggacca
 SMAD2 F: aactatctcctactactctttccc NM_005901.6 60
R: cactcctcttcctatatgcct
 SMAD3 F: agacaccagttctacctcct NM_005902.4 60
R: ggtctctggaatattgctctg
 NODAL F: gcg tac atg ctg agc ctc ta NM_018055 60
R: ggt gac ctg gga caa agt g
 NR5A2 F: ctttgtcccgtgtgtggagat NM_205860.3 60
R: gtcggcccttacagcttcta
 ARGFX F: gaacgtacttctttcacccac NM_001012659 60
R: ttcctgaaccaaacctttactg
 KHDC1L F: gacttgatgacacgtaccttcg NM_001126063.3 60
R: agcgtgacacttggagtcct
 LEFTY‐1 F: tgctacaggtgtcggtgcagagg NM_020997.4 60
R: agaaacggacacttgaaggccagg
 LEFTY‐2 F: gggaattgggatacctggat NM_003240.5 60
R: ctaaatatgcacgggcaagg
PCR
 Mitochondrial cytochrome C oxidase subunit I (COI)_Homo Sapiens F: tagacatcgtactacacgacacg 58
R: tccaggtttatggagggttc

BRA, brachyury.