Skip to main content
. 2020 Oct 5;7:324. doi: 10.1038/s41597-020-00666-0

Table 3.

Root-knot nematode genome features.

Species/Feature Assembly size (Mb) Nuclear DNA content (Mb) % complete CEGMA (C) (copies) %Partial (P) % complete BUSCO (C) % fragment (F) % missing (M) N50 (kb) # contigs/ scaffolds GC %

M. enterolobii

(Swiss)*

 240 275 ± 19

C: 94.76 (3.30)

P: 96.77

C:87.5%

F:3.6%; M:8.9%

 143 4,437 30

M. enterolobii

(L30) 20

162.4 NA

C: 81.45 (2.66)

P: 89.92

C:79.9%

F:8.9%; M:11.2%

 9.3 46,090 30.2
M. incognita (Morelos, 2017) 17 183.5 189 ± 15

C: 94.76 (2.93)

P :96.77

C:88.5%

F:3.0%; M:8.5%

 38.6 12,091 29.8

M. incognita

(W1) 20

122 NA

C: 82.66 (2.34)

P :89.52

C:80.2%

F:7.9%; M:11.9%

 16.5 33,735 30.6
M. incognita (Morelos, 2008) 69 86 189 ± 15

C: 74.6 (1.77)

P :78.63

C:71.3%

F:7.3%; M:21.4%

 82.8 2,817 31.4
M. javanica (Avignon) 17 235.8 297 ± 27

C: 92.74 (3.68)

P :95.56

C:90.1%

F:2.3%; M:7.6%

 10.4 31,341 30

M. javanica

(VW4) 20

142.6 NA

C :89.52 (2.71)

P: 95.16

C:87.5%

F:4.3%; M:8.2%

 14.1 34,394 30.2

M. arenaria

(Guadeloupe) 17

258.1 304 ± 9

C :94.76 (3.66)

P :95.56

C:87.1%

F:4.3%; M:8.6%

 16.5 26,196 30

M. arenaria

(A2-O) 71

284.05 NA

C: 94.76 (3.57)

P :96.77

C:87.1%

F:2.6%; M:10.3%

 204.6 2,224 30

M. arenaria

(HarA) 20

163.8 NA

C :91.53 (2.74)

P :95.97

C: 78.2

F :12.2; M:9.6

 10.5 46,509 30.3

M. hapla

(VW9) 65

53.6 121 ± 3

C :93.55 (1.19)

P: 95.56

C:87.4%

F:4.3%; M:8.3%

 83.6 1,523 27.4

M. floridensis

(JB5) 72

99.9 NA

C: 56.45 (1.95)

P: 76.61

 C:54.1%F:28.7%; M:17.2% 3.5 81,111 29.7

M. floridensis

(SJF1) 20

74.9 NA

C: 77.42 (1.71)

P: 83.87

C:76.5%

F:7.6%; M:15.9%

 13.3 9,134 30.2

M. luci

(SI-Smartno) 73

209.2 NA

C: 95.56 (2.92)

P :96.77

C:87.8%

F:4.0%; M:8.2%

 1,712 327 30.2

M. graminicola

(IARI) 74

38.18 NA

C: 84.27 (1.34)

P: 90.73

C:73.6%

F:15.2%; M:11.2%

 20.4 4,304 23.05

*This work.