Table 1. List of the genomes used in this study, their assembly size, and number of predicted proteins.
Species | Total Assembled Size | No. of Proteins | Reference |
---|---|---|---|
Aethionema arabicum | 199,432,295 | 37,839 | Haudry et al. (2013) |
Arabidopsis halleri | 127,615,339 | 26,911 | Briskine et al. (2017) |
Arabidopsis lyrata | 206,667,935 | 33,132 | Rawat et al. (2015) |
Arabidopsis Araport | N/A | 48,359 | Arabidopsis Genome Initiative (2000) |
Arabidopsis TAIR | 119,667,750 | 37,513 | Cheng et al. (2017) |
Arabis alpina | 336,719,365 | 34,220 | Willing et al. (2015) |
Barbarea vulgaris | 167,749,783 | 25,350 | Byrne et al. (2017) |
Boechera stricta | 189,344,188 | 29,812 | Lee et al. (2017) |
Brassica juncea | 937,030,072 | 79,644 | Yang et al. (2016) |
Brassica napus ‘Darmor-bzh V4’ | 850,288,203 | 101,040 | Chalhoub et al. (2014) |
Brassica napus ‘Tapidor’ | 636,323,668 | 84,347 | Bayer et al. (2017) |
Brassica napus ‘ZS11’ | 976,245,903 | 101,942 | Sun et al. (2017) |
Brassica napus pangenome | 1,048,086,857 | 111,283 | Hurgobin et al. (2018) |
Additional contigs | 197,794,754 | 16,518 | Hurgobin et al. (2018) |
Darmor-bzh V8.1 | 850,292,103 | 94,765 | Bayer et al. (2017) |
Brassica nigra | 402,096,365 | 47,953 | Yang et al. (2016) |
Brassica oleracea pangenome | 587,191,128 | 66,298 | Golicz et al. (2016) |
Additional contigs | 98,568,621 | 7,078 | Golicz et al. (2016) |
V2.1 | 488,622,507 | 59,220 | Parkin et al. (2014) |
Brassica rapa | N/A | 45,985 | Zhang et al. (2018) |
Camelina sativa | 641,452,262 | 94,495 | Kagale et al. (2014) |
Capsella grandiflora | 105,346,052 | 26,561 | Slotte et al. (2013) |
Capsella rubella | 134,834,574 | 28,447 | Slotte et al. (2013) |
Cardamine hirsuta | 198,654,690 | 38,094 | Gan et al. (2016) |
Eutrema salsugineum | 243,117,811 | 26,351 | Yang et al. (2013) |
Leavenworthia alabamica | 174,200,922 | 38,676 | Haudry et al. (2013) |
Lepidium meyenii | 743,171,196 | 96,417 | Zhang et al. (2016a) |
Raphanus raphanistrum | 254,586,761 | 50,972 | Moghe et al. (2014) |
Raphanus sativus | 402,330,269 | 80,521 | Kitashiba et al. (2014) |
Raphanus sativus | 383,104,752 | 64,657 | Mitsui et al. (2015) |
Sisymbrium irio | 259,494,581 | 49,956 | Haudry et al. (2013) |
Tarenaya hassleriana | 249,929,577 | 40,802 | Cheng et al. (2013) |
Schrenkiella parvula | 137,251,937 | 28,178 | Dassanayake et al. (2011) |
Thlaspi arvense | 343,012,389 | 27,390 | Dorn et al. (2015) |