Table 1.
Currently available databases for PPIs.
| Database | Description | Year | Database URL |
|---|---|---|---|
| DIP | Several species PPIs that are manually curated | 2002 | https://dip.doe-mbi.ucla.edu/dip/Main.cgi |
| TAIR | PPI annotations for Arabidopsis thaliana | 2007 | https://www.arabidopsis.org/portals/proteome/proteinInteract.jsp |
| PPIM | PPI database for Maize | 2016 | comp-sysbio.org/ppim/ |
| PPIM | 2,762,560 interactions among 14,000 proteins | 2016 | https://dbaasp.org/home |
| HIPPIE | Human PPI references | 2017 | http://cbdm.uni-mainz.de/hippie/ |
| BioGRID | 400,000 PPIs collected from the experimentations and primary literatures | 2018 | https://openwetware.org/wiki/Protein-protein_interaction_databases#BioGRID |
| APID | Agile protein intercoms database for bacterial PPIs | 2019 | http://compsysbio.org/bacteriome/ |
| APID | It integrates the existing public resources and provides PPI information of more than 1100 organisms | 2019 | http://apid.dep.usal.es |