Table 5. Between software Pearson correlation using real data.
We ran all five software on 61 real admixed individuals from the 1000 Genomes ASW (African Ancestry in Southwest US) population. Here we report the squared pairwise Pearson correlations of local ancestry estimates. Additionally, in the last column, we report the squared correlation of each software’s estimated mean African ancestry with genotypic principal component 1.
| ELAI | LAMP-LD | Loter | RFMix | MOSAIC | PC1 | |
|---|---|---|---|---|---|---|
| ELAI | 1 | – | – | – | – | 0.965 |
| LAMP-LD | 0.977 | 1 | – | – | – | 0.968 |
| Loter | 0.976 | 0.981 | 1 | – | – | 0.967 |
| RFMix | 0.974 | 0.977 | 0.977 | 1 | – | 0.967 |
| MOSAIC | 0.959 | 0.959 | 0.962 | 0.961 | 1 | 0.960 |