| Antibodies |
| Rabbit polyclonal anti-GABA |
Sigma-Aldrich |
Cat#: A2052; RRID:AB_477652 |
| Guinea pig polyclonal anti-GAD2 |
Synaptic Systems |
Cat#: 198104; RRID: AB_10557995 |
| Guinea pig polyclonal anti-VGluT2 |
Merck Millipore |
Cat#: AB2251-I; RRID:AB_2665454 |
| Mouse monoclonal anti-Syt2 |
Developmental Studies Hybridoma Bank |
Cat#: A2315626; RRID: AB_2315226 |
| Bacterial and Virus Strains |
| AAV1.syn.GCaMP6s.WPRE.SV40 |
UPenn viral core |
Cat#: 100843 |
| Experimental Models: Organisms/Strains |
| Swiss Webster (CFW) |
C.E Janvier |
SW-F/ SW-M |
| Gad67.Cre |
a gift from H. Monyer Heidelberg University |
N/A |
| RCL-GCaMP6s (Ai96) |
Jackson Laboratories |
02 4106 |
| SST.Cre |
a gift from N. Heintz, Rockefeller University |
N/A |
| Lhx6.Cre |
Jackson Laboratories |
026555 |
| 5HT3aR.Cre |
a gift from N. Heintz, Rockefeller University |
N/A |
| GAD67-GFP-KI |
a gift from K. Obata Department of Morphological Brain Science, Kyoto |
N/A |
| 5-HT3aR-GFP-KI |
a gift from G. Fishell Harvard University |
N/A |
| Software and Algorithms |
| CaImAn |
Pnevmatikakis et al., 2016; Giovannucci et al., 2018
|
https://github.com/flatironinstitute/CaImAn-MATLAB |
| NoRMCorre |
Pnevmatikakis and Giovannucci, 2017 |
https://github.com/flatironinstitute/NoRMCorre |
| Iterative K-means clustering |
Malvache et al., 2016 |
http://gitlab.com/cossartlab |
| t-SNE |
Van Der Maaten and Hinton, 2008 |
https://lvdmaaten.github.io/tsne/#implementations |
