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. 2020 Aug 9;10(4):610–616. doi: 10.34172/apb.2020.073

Table 3. Minimum free energy for mRNA secondary structure formation around the 5’-terminal end .

ORF Nucleotide sequences Minimum Free Energy (Kcal/mol)
RNAfold Kinefold
hG-CSF1 CC TCT AGA AAT AAT TTT GTT TAAC TTT TAG GAG GTA AAA CAT ATG ACC CCG CTT GGC CCT GCG AGC AGC CTG CCC -12.4 -15.9
hG-CSF-2 CC TCT AGA AAT AAT TTT GTT TAAC TTT TAG GAG GTA AAA CAT ATG ACA CCA CTT GGC CCA GCA AGC TCC CTG CCC -8.9 -12.4
hG-CSF-3 CC TCT AGA AAT AAT TTT GTT TAAC TTT TAG GAG GTA AAA CAT ATG ACA CCA CTT GGC CCT GCA TCA TCT CTG CCC -7.3 -10.8

Note: The sequences in blue color are ribosome binding site.