Antibodies |
Mouse Monoclonal Antibody-18A7 |
This study |
N/A |
Mouse Monoclonal Antibody-14B10 |
This study |
N/A |
Mouse Monoclonal Antibody-NA9D7 |
This study |
N/A |
Bacterial and Virus Strains |
CVA16/190 strain |
This study (Infectious clone) |
GenBank no. KJ850274
|
CVA16/213a strain |
This study (Infectious clone) |
GenBank no. JX127259
|
CVA16/4430 strain |
This study (Infectious clone) |
GenBank no. JX127274
|
CVA16/4479 strain |
This study (Infectious clone) |
GenBank no. JX127277
|
Chemicals, Peptides, and Recombinant Proteins |
SYTO9 |
Invitrogen |
S34854 |
Critical Commercial Assays |
QIAamp Mini viral RNA Extraction Kit |
Qiagen |
52904 |
Deposited Data |
Cryo-EM structure of CVA16 mature virion |
This paper |
EMD-0887, PDB: 6LHA |
Cryo-EM structure of CVA16 A-particle |
This paper |
EMD-0888, PDB: 6LHB |
Cryo-EM structure of CVA16 empty particle |
This paper |
EMD-0889, PDB: 6LHC |
Cryo-EM structure of CVA16-M:18A7 |
This paper |
EMD-0890, PDB: 6LHK |
Cryo-EM structure of CVA16-A:18A7 |
This paper |
EMD-0891, PDB: 6LHL |
Cryo-EM structure of CVA16-E:18A7 |
This paper |
EMD-0892, PDB: 6LHO |
Cryo-EM structure of CVA16-M:18A7-local |
This paper |
EMD-0897, PDB: 6LHT |
Cryo-EM structure of CVA16-M:14B10 |
This paper |
EMD-0894, PDB: 6LHP |
Cryo-EM structure of CVA16-M:NA9D7 |
This paper |
EMD-0895, PDB: 6LHQ |
Cryo-EM structure of CVA16-M:18A7:14B10:NA9D7 |
This paper |
EMD-0898 |
Experimental Models: Cell Lines |
Myeloma cells (Sp2/0-Ag-14) |
This study |
N/A |
RD cells |
ATCC |
CCL-136 |
Experimental Models: Organisms/Strains |
BALB/c mice |
Slac Laboratory Animal Co., shanghai, China |
N/A |
Software and Algorithms |
Prism 7.0 |
GraphPad Software |
N/A |
MotionCor2 |
(Zheng et al., 2017) |
http://msg.ucsf.edu/em/software/motioncor2.html |
Gctf |
(Zhang, 2016) |
https://en.wikibooks.org/w/index.php?title=Software_Tools_For_Molecular_Microscopy&stable=0#Gctf |
RELION2.1 |
(Kimanius et al., 2016) |
http://www2.mrc-lmb.cam.ac.uk/relion |
ResMap |
(Kucukelbir et al., 2014) |
http://resmap.sourceforge.net |
AUTO3DEM |
(Yan et al., 2007) |
http://cryoem.ucsd.edu/wikis/software/start.php?id=auto3dem:home |
Chimera |
(Pettersen et al., 2004) |
http://www.cgl.ucsf.edu/chimera |
PyMOL |
(Schrodinger, 2010) |
https://pymol.org/2/ |
cryoSPARC |
(Punjani et al., 2017) |
https://cryosparc.com |
ChimeraX |
(Goddard et al., 2018) |
https://www.cgl.ucsf.edu/chimerax/ |
COOT |
(Emsley and Cowtan, 2004) |
http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot |
PHENIX |
(Adams et al., 2010) |
http://phenix-online.org |
Molprobity |
(Chen et al., 2010) |
http://molprobity.biochem.duke.edu |
CCP4 |
(Collaborative, 1994) |
http://www.ccp4.ac.uk |
cisTEM |
(Grant et al., 2018) |
https://cistem.org |
Scipion |
(De la Rosa-Trevín et al., 2016) |
https://scipion-em.github.io/docs/ |
Localized reconstruction |
(Ilca et al., 2015) |
https://github.com/OPIC-Oxford/localrec |
Rivem |
(Xiao and Rossmann, 2007) |
http://bilbo.bio.purdue.edu/~viruswww/Rossmann_home/softwares/river_programs/rivem.php |
Other |
Quantifoil R 2/2 Cu grids |
Quantifoil |
Q2100CR2 |