TABLE 1.
Phenotypic and genotypic features of ESBL‐producing E. coli strains isolated from peri‐urban wild animals, Brazil
| ID strains | Animal sources | ST/CC | Serotype | Virulence genes | Resistance phenotype | Resistance genotype | Plasmid type | Accession number |
|---|---|---|---|---|---|---|---|---|
| ECPET3 | Black Vulture (Coragyps atratus) | 212/− | O18/O18ac:H49 | gad, iss, lpfA | CRO, CTX, CAZ, CPM, ATM | bla CTX‐M‐55, bla TEM‐1B, mdf(A) | FII, N | PQET00000000 |
| ECPET11 | South American Coati (Nasua nasua) | 744/10 | O89/O162:H10 | gad, iss, cma, iroN | CRO, CTX, CAZ, CPM, ATM, CIP, NAL, GEN, KAN, TOB, STR, CLO, SUT, TET | bla CTX‐M‐55, bla TEM‐1B, aadA1, aadA2, aadA5, aac(3)‐IId, aph(3′)‐Ia, aph(3″)‐Ib, aph(6)‐Id, fosA3, catA1, cmlA1, sul1, sul2, dfrA17, tet(B), mdf(A) | Q1, FIB, FII, N, X1 | PQEU00000000 |
| ECPET13 | Striped Owl (Asio clamator) | 212/‐ | O18/O18ac:H49 | iss, lpfA | AMC, CRO, CTX, CAZ, CPM, ATM, NAL | bla CTX‐M‐55, bla TEM‐1B, mdf(A) | FII, N | PQEV00000000 |
| ECPET31 | South American Coati (Nasua nasua) | 58/155 | O78:H21 | gad, iss, lpfA | CRO, CTX, CAZ, CPM, ATM, CIP, GEN, KAN, TOB, STR, CLO, SUT, TET | bla CTX‐M‐2, aadA1, aac(3)‐IV, aph(3″)‐Ib, aph(3′)‐Ia, aph(4)‐Ia, aph(6)‐Id, sul1, sul2, dfrA7, tet(A), mdf(A) | FIA, HI2, HI2A, Q1, FII | PQEW00000000 |
| ECPET36 | South American Coati (Nasua nasua) | 1251/‐ | O130:H26 | gad | AMC, CRO, CTX, CAZ, CPM, ATM, CIP, NAL, GEN, KAN, TOB, STR, CLO, SUT | bla CTX‐M‐15, bla TEM‐1B, qnrB1, aac(3)‐IIa, aac(6′)Ib‐cr, aadA1, aph(3″)‐Ib, aph(6)‐Id, catB3, catA1, sul2, dfrA1, dfrA14, mdf(A) | HI2, HI2A, p0111 | PQEX00000000 |
| ICBUR6 | Black Vulture (Coragyps atratus) | 1158/31 | O17/O44/O77:H34 | iss, astA, eilA, celb, iha, air, ireA | CRO, CTX, CPM, ATM, KAN, TOB, CLO, SUL, TET | bla CTX‐M‐2, qnrB19, aadA1, aph(3′)‐Ia, aph(6)‐Id, aph(3″`)‐Ib, catA1, sul1, sul2, tet(B), mdf(A) | FIB, FII, Col156 | PPCS00000000 |
| ICBUR15 | Black Vulture (Coragyps atratus) | 38/38 | O86:H18 | gad, iss, astA, eilA | CRO, CTX, CPM, ATM, CIP, NAL, TOB, STR, SUL | bla CTX‐M‐14, aph(6)‐Id, aph(3″)‐Ib, sul2, mdf(A) | l2 | PPCU00000000 |
| ICBUR20 | Black Vulture (Coragyps atratus) | 38/38 | O86:H18 | iss, astA, eilA, air | CRO, CTX, CPM, ATM, CIP, NAL, AMK, STR, SUL | bla CTX‐M‐14, aph(6)‐Id, aph(3″)‐Ib, sul2, mdf(A) | l2 | PPCT00000000 |
Abbreviations: CC, clonal complex; ST, sequence type. Resistance phenotype: AMC, amoxicillin/clavulanic acid; AMK, amikacin; ATM, aztreonam; CAZ, ceftazidime; CIP, ciprofloxacin; CLO, chloramphenicol; CPM, cefepime; CRO, ceftriaxone; CTX, cefotaxime; GEN, gentamicin; KAN, kanamycin; NAL, nalidixic acid; STR, streptomycin; SUL, sulfonamide; SUT, trimethoprim‐sulfamethoxazole; TET, tetracycline; TOB, Tobramycin.