Table 1.
List of the 25 most expressed genes in each sample (RPKM).
| Isolate 1 | Isolate 2 | Isolate 3 | Isolate 4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene ID | Name | RPKM | Gene ID | Name | RPKM | Gene ID | Name | RPKM | Gene ID | Name | RPKM |
| PVP01_0532300 | Early transcribed membrane protein (ETRAMP) | 16,197 | PVP01_0532300 | Early transcribed membrane protein (ETRAMP) | 16,809.1 | PVP01_0532300 | Early transcribed membrane protein (ETRAMP) | 15,516.8 | PVP01_0532300 | Early transcribed membrane protein (ETRAMP) | 15,250.1 |
| PVP01_0905900 | Histone 2B, putative (H2B) | 6237.89 | PVP01_0905900 | 18S ribosomal RNA | 8562.75 | PVP01_0202900 | 18S ribosomal RNA | 15,217.2 | PVP01_MIT01200 | Unspecified product | 10,247.8 |
| PVP01_0819300 | Histone H2A.Z, putative (H2A.Z) | 5877.47 | PVP01_0819300 | Histone 2B, putative (H2S) | 6220.65 | PVP01_0905900 | Histone 2B, putative (H2S) | 9824.49 | PVP01_0905900 | Histone 2B, putative (H2B) | 9071.38 |
| PVP01_0422600 | Early transcribed membrane protein (ETRAMP 11.2) | 5294.71 | PVP01_MIT01200 | Early transcribed membrane protein (ETRAMP11.2) | 5362.27 | PVP01_0422600 | Early transcribed membrane protein (ETRAMP11.2) | 7638.99 | PVP01_1138700 | Histone H3, putative (H3) | 4486.27 |
| PVP01_0622400 | Antigen UB05, putative | 3966.68 | PVP01_0422600 | 28S ribosomal RNA | 4654 | PVP01_0504500 | 28S ribosomal RNA | 6651 | PVP01_0819300 | Histone H2A.Z, putative (H2A.Z) | 4364.04 |
| PVP01_MIT01200 | Unspecified product | 3839.68 | PVP01_1138700 | Unspecified product | 4538.19 | PVP01_MIT01200 | Unspecified product | 6089.82 | PVP01_1131700 | Histone H2A, putative (H2A) | 4215.99 |
| PVP01_0612400 | Merozoite capping protein 1, putative (nPrx) | 3800.53 | PVP01_1131700 | Merozoite capping protein 1, putative (nPrx) | 3907.91 | PVP01_0612400 | Merozoite capping protein 1, putative (nPrx) | 4223.72 | PVP01_0612400 | Merozoite capping protein 1, putative (nPrx) | 3913.89 |
| PVP01_1138700 | Histone H3, putative (H3) | 3661.46 | PVP01_0612400 | Histone H4, putative (H4) | 3779.44 | PVP01_0905800 | Histone H4, putative (H4) | 4164.03 | PVP01_0422600 | Early transcribed membrane protein (ETRAMP11.2) | 3656.38 |
| PVP01_0300700 | Plasmodium exported protein, unknown function | 3635.15 | PVP01_1446800 | Actin, putative (ACT1) | 3429.77 | PVP01_1463200 | Actin, putative (ACT1) | 3967.17 | PVP01_0734800 | Early transcribed membrane protein (ETRAMP) | 3410.88 |
| PVP01_1131700 | Histone H2A, putative (H2A) | 3156.23 | PVP01_0622400 | Histone H2A, putative (H2A) | 3171.27 | PVP01_1131700 | Histone H2A, putative (H2A) | 3935.14 | PVP01_0300700 | Plasmodium exported protein, unknown function | 3364.47 |
| PVP01_1463200 | Actin, putative (ACT1) | 2874.06 | PVP01_0734800 | Histone H3, putative (H3) | 2978.07 | PVP01_1138700 | Histone H3, putative (H3) | 3828.61 | PVP01_0905800 | Histone H4, putative (H4) | 3234.02 |
| PVP01_1460700 | Translation initiation factor SUI1, putative (SUI1) | 2693.24 | PVP01_1463200 | Histone H2A.Z, putative (H2A.Z) | 2807.36 | PVP01_0819300 | Histone H2A.Z, putative (H2A.Z) | 3757.5 | PVP01_0622400 | Antigen UB05, putative | 3078.14 |
| PVP01_1446800 | Merozoite surface protein 9 (MSP9) | 2624.68 | PVP01_0300700 | Acyl-CoA binding protein, putative (ACBP) | 2764.72 | PVP01_1430300 | Acyl-CoA binding protein, putative (ACBP) | 3317.42 | PVP01_1463200 | Actin, putative (ACT1) | 3055.19 |
| PVP01_0734800 | Early transcribed membrane protein (ETRAMP) | 2478.01 | PVP01_0202900 | Plasmodium exported protein, unknown function | 2590.76 | PVP01_0300700 | Plasmodium exported protein, unknown function | 3097.2 | PVP01_1460700 | Translation initiation factor SUI1, putative | 3035.99 |
| PVP01_0817200 | Translation machinery-associated protein 7, putative (TMA7) | 2450.16 | PVP01_0817200 | Ookinete surface protein P25 (P25) | 2368.29 | PVP01_0616100 | Ookinete surface protein P25 (P25) | 2525.47 | PVP01_1446800 | Merozoite surface protein 9 (MSP9) | 2956.09 |
| PVP01_1423100 | Histone 2B variant, putative (H2B.Z) | 2073.71 | PVP01_0305600 | Inositol-3-phosphate synthase, putative (INO1) | 2341.59 | PVP01_1022200 | Inositol-3-phosphate synthase, putative (INO1) | 2415.42 | PVP01_0305600 | Sexual stage antigen s16, putative | 2756.14 |
| PVP01_0305600 | Sexual stage antigen s16, putative | 2014.9 | PVP01_1460700 | Early transcribed membrane protein (ETRAMP) | 2262.4 | PVP01_0734800 | Early transcribed membrane protein (ETRAMP) | 2225.38 | PVP01_0616100 | Ookinete surface protein P25 (P25) | 2276.45 |
| PVP01_0616100 | Ookinete surface protein P25 (P25) | 2012.9 | PVP01_1022200 | Histone H2B variant, putative (H2B.Z) | 2183.03 | PVP01_1423100 | Histone H2B variant, putative (H2B.Z) | 2128.31 | PVP01_1022200 | Inositol-3-phosphate synthase, putative (INO1) | 1983.83 |
| PVP01_1022200 | Inositol-3-phosphate synthase, putative (INO1) | 1988.91 | PVP01_0905800 | Translation initiation factor SUI1, putative | 2157.64 | PVP01_1460700 | Translation initiation factor SUI1, putative | 2126.72 | PVP01_1423100 | Histone H2B variant, putative (H2B.Z) | 1886.4 |
| PVP01_1023000 | Translationally-controlled tumour protein homolog, putative (TCTP) | 1855.69 | PVP01_0728900 | Merozoite surface protein 1 (MSP1) | 2045.53 | PVP01_0728900 | Merozoite surface protein 1 (MSP1) | 2113.79 | PVP01_1023000 | Translationally-controlled tumor protein homolog, putative (TCTP) | 1721.61 |
| PVP01_0905800 | Histone H4, putative (H4) | 1756.98 | PVP01_1338500 | Merozoite surface protein 9 (MSP9) | 1954.86 | PVP01_1446800 | Merozoite surface protein 9 (MSP9) | 2072.79 | PVP01_0728900 | Merozoite surface protein 1 (MSP1) | 1709.71 |
| PVP01_1430300 | Acyl-CoA binding protein, putative (ACBP) | 1712.13 | PVP01_1023000 | Antigen UB05, putative | 1932.73 | PVP01_0622400 | Antigen UB05, putative | 1843.76 | PVP01_0417600 | Serine-repeat antigen 5 (SERA) | 1696.03 |
| PVP01_0728900 | Merozoite surface protein 1 (MSP1) | 1673.39 | PVP01_1423100 | Rhoptry-associated membrane antigen, putative (RAMA) | 1873.43 | PVP01_0107500 | Rhoptry-associated membrane antigen, putative (RAMA) | 1834.14 | PVP01_1441300 | cAMP-dependent protein kinase regulatory subunit, putative | 1598.73 |
| PVP01_0716300 | Endoplasmic reticulum chaperone BiP, putative | 1611.07 | PVP01_0107500 | Rhoptry-associated protein 1 (RAP1) | 1830.12 | PVP01_1338500 | Rhoptry-associated protein 1 (RAP1) | 1764.16 | PVP01_1245500 | 40S ribosomal protein S28e, putative | 1593.55 |
| PVP01_1245500 | 40S ribosomal protein S28e, putative | 1579.65 | PVP01_1136400 | Translationally-controlled tumor protein homolog, putative (TCTP) | 1578.84 | PVP01_1023000 | Translationally-controlled tumor protein homolog, putative (TCTP) | 1673.08 | PVP01_0216700 | Plasmodium exported protein, unknown function | 1526.09 |