Table 2.
Differentially expressed genes belonging to clusters (in bold) or multigene families in Cambodian isolates (RPKM-adjusted for sequence variation).
| Gene ID | Name | Isolate 1 RPKM | Isolate 2 RPKM | Isolate 3 RPKM | Isolate 4 RPKM | Cv | D |
|---|---|---|---|---|---|---|---|
| PVP01_0000170 | Tryptophan-rich protein (TRAG32) | 29.27 | 240.68 | 43.30 | 127.00 | 0.88 | 85.81 |
| PVP01_0004360 | PIR protein | 65.82 | 88.33 | 148.22 | 7.42 | 0.75 | 43.75 |
| PVP01_0004370 | PIR protein | 162.13 | 55.23 | 24.47 | 25.21 | 0.98 | 63.63 |
| PVP01_0010200 | Merozoite surface protein 3, putative | 1246.43 | 3.94 | 1.49 | 1.90 | 1.98 | 1234.29 |
| PVP01_0010220 | Merozoite surface protein 3, putative | 88.55 | 59.88 | 268.46 | 367.45 | 0.75 | 110.02 |
| PVP01_0122100 | PIR protein | 89.09 | 24.60 | 22.38 | 11.90 | 0.95 | 33.44 |
| PVP01_0201800 | PIR protein | 132.21 | 399.29 | 124.40 | 431.42 | 0.61 | 101.71 |
| PVP01_0405200 | Plasmodium exported protein (PHISTc) | 24.31 | 12.49 | 87.81 | 8.58 | 1.11 | 41.02 |
| PVP01_0417400 | Serine-repeat antigen 4 (SERA) | 96.58 | 42.93 | 61.45 | 192.20 | 0.68 | 44.91 |
| PVP01_0423700 | PIR protein | 51.79 | 11.96 | 2.67 | 7.34 | 1.22 | 27.59 |
| PVP01_0504000 | Plasmodium exported protein (PHIST) | 102.08 | 54.14 | 157.91 | 38.34 | 0.61 | 32.91 |
| PVP01_0504100 | Plasmodium exported protein | 19.10 | 7.17 | 69.67 | 5.00 | 1.20 | 36.29 |
| PVP01_0504400 | Sporozoite invasion-associated protein 2, putative (SIAP2) | 56.42 | 17.14 | 120.93 | 8.91 | 1.01 | 51.38 |
| PVP01_0504500 | 28S ribosomal RNA | 973.82 | 1698.50 | 9873.71 | 1206.48 | 1.25 | 5380.46 |
| PVP01_0504700 | 18S ribosomal RNA | 80.00 | 202.88 | 963.80 | 84.93 | 1.27 | 541.09 |
| PVP01_0515900 | Plasmodium exported protein (PHIST) | 67.25 | 29.84 | 418.41 | 18.47 | 1.43 | 273.52 |
| PVP01_0516500 | Plasmodium exported protein (PHIST) | 15.97 | 9.14 | 57.87 | 5.37 | 1.10 | 26.64 |
| PVP01_0523200 | Plasmodium exported protein (PHIST) | 42.97 | 25.14 | 95.39 | 11.34 | 0.84 | 30.99 |
| PVP01_0524100 | Plasmodium exported protein (PHIST) | 33.26 | 13.50 | 83.18 | 14.15 | 0.91 | 29.77 |
| PVP01_0533700 | Plasmodium exported protein (PHIST) | 45.73 | 21.98 | 238.70 | 9.16 | 1.36 | 146.77 |
| PVP01_0534300 | Reticulocyte binding protein 2c (RBP2c) | 62.67 | 41.64 | 177.40 | 14.22 | 0.97 | 69.57 |
| PVP01_0601600 | Plasmodium exported protein (PHIST) | 24.48 | 15.11 | 74.78 | 5.13 | 1.04 | 32.09 |
| PVP01_0601700 | Plasmodium exported protein (PHIST) | 54.34 | 30.64 | 161.54 | 15.87 | 1.00 | 66.20 |
| PVP01_0623800 | Duffy binding protein (DBP) | 90.60 | 32.36 | 277.41 | 20.05 | 1.13 | 134.55 |
| PVP01_0700700 | Tryptophan-rich protein (TRAG34) | 136.11 | 84.55 | 310.05 | 52.34 | 0.79 | 90.46 |
| PVP01_0701200 | reticulocyte binding protein 1a (RBP1a) | 70.02 | 31.49 | 152.90 | 20.69 | 0.87 | 52.25 |
| PVP01_0800700 | Reticulocyte binding protein 2b (RBP2b) | 45.68 | 18.96 | 99.58 | 12.59 | 0.90 | 35.49 |
| PVP01_0808700 | Plasmodium exported protein (PHIST) | 19.84 | 6.29 | 121.89 | 10.69 | 1.39 | 76.52 |
| PVP01_0839300 | PIR protein | 68.46 | 7.34 | 5.55 | 13.42 | 1.27 | 38.08 |
| PVP01_1031100 | Merozoite surface protein 3 (MSP3G) | 52.07 | 67.67 | 196.89 | 43.37 | 0.80 | 57.55 |
| PVP01_1031400 | merozoite surface protein 3 (MSP3.5) | 143.78 | 78.00 | 14.38 | 84.49 | 0.66 | 34.92 |
| PVP01_1031500 | Merozoite surface protein 3 (MSP3.3) | 208.61 | 185.68 | 94.54 | 835.10 | 1.03 | 348.59 |
| PVP01_1031700 | Merozoite surface protein 3 (MSP3.1) | 2606.85 | 1761.98 | 1889.06 | 197.99 | 0.63 | 637.85 |
| PVP01_1033800 | Tryptophan-rich protein (TRAG17) | 402.99 | 155.61 | 853.86 | 195.32 | 0.80 | 255.09 |
| PVP01_1100400 | PIR protein | 50.33 | 167.19 | 25.26 | 55.55 | 0.85 | 53.45 |
| PVP01_1201400 | Plasmodium exported protein (PHIST) | 57.95 | 34.49 | 215.77 | 12.58 | 1.15 | 106.14 |
| PVP01_1219800 | MSP7-like protein (MSP7.6) | 179.79 | 177.55 | 496.23 | 76.87 | 0.78 | 142.69 |
| PVP01_1220200 | MSP7-like protein (MSP7.9) | 1032.53 | 2939.70 | 1457.97 | 322.91 | 0.77 | 849.01 |
| PVP01_1401800 | Tryptophan-rich protein (TRAG21) | 34.54 | 22.27 | 118.27 | 6.70 | 1.10 | 54.72 |
| PVP01_1402400 | Reticulocyte binding protein 2a (RBP2a) | 44.16 | 16.73 | 95.14 | 11.52 | 0.91 | 34.98 |