Table 1.
Subclade | Rhodopsin-possessing | All | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Rhodopsin | Habitat | Genome | Genome | |||||||||
XLR | NaR | XeR | CyHR | CyR | Total | Marine | Freshwater | Saline | NA* | |||
A, C, F, G | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 56† |
B | 1 | 1 | 12 | 18 | 12 | 44 | 2 | 21 | 9‡ | 2 | 34 | 85 |
D | 1 | 0 | 2 | 5 | 1 | 9 | 0 | 6 | 0 | 0 | 6 | 7 |
E | 0 | 0 | 1 | 1 | 0 | 2 | 0 | 1 | 0 | 0 | 1 | 5 |
NA* | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 1 |
Total | 3 | 1 | 15 | 24 | 13 | 56 | 2 | 29 | 9 | 2 | 42 | 154 |
*NA = “not available”.
†The genomes are included as follows: subclade A(13), C(36), F(4), and G(3).
‡Eight of the nine genomes are derived from the strains isolated at the same site, with little genetic variation.