Table 1.
Genes encoded on the Durio zibethinus chloroplast genome, grouped according to function.
| Category | Gene groups | Name of genes |
|---|---|---|
| Self-replication | Large subunit of ribosomal proteins | rpl2, rpl14, rpl16, rpl20, rpl232, rpl32, rpl33, rpl36 |
| Small subunit of ribosomal proteins | rps2, rps3, rps4, rps7, rps8, rps11, rps12, rps14, rps15, rps16, rps18, rps19 | |
| DNA-dependent RNA polymerase | rpoA, rpoB, rpoC1, rpoC2 | |
| Ribosomal RNA genes | rrn4.5, rrn5, rrn16, rrn23 | |
| Transfer RNA genes | trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC, trnH-GUG, trnI-CAU, trnI-GAU, trnL-CAA, trnL-UAG, trnL-UAA, trnM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG, trnR-ACG, trnR-UCU, trnS-GCU, trnS-UGA, trnS-GGA, trnT-UGU, trnT-GGU, trnV-GAC, trnV-UAC, trnW-CCA, trnY-GUA | |
| Photosynthesis | Photosystem I | psaA, psaB, psaC, psaI, psaJ |
| Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| NADH dehydrogenase | NADH dehydrogenase | ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK |
| Cytochrome b/f complex | petA, petB, petD, petG, petL, petN | |
| ATP synthase | atpA, atpB, atpE, atpF, atpH, atpI | |
| RubisCo large subunit | rbcL | |
| Other genes | Maturase K | matK |
| Envelope membrane protein | cemA | |
| Subunit of acetyl-CoAcarboxylase | accD | |
| C-type cytochrome synthesis gene | ccsA | |
| Protease | clpP1 | |
| Conserved hypothetical chloroplast open reading frames | ycf1, ycf2, ycf3, ycf4, ycf15 |