Table 2.
Chloroplast SNPs identified from 24 Thai varieties and the Musang King variety of duran.
| POS | REF | ALT | X41 | X43 | X46 | X62 | X79 | Mk |
|---|---|---|---|---|---|---|---|---|
| 4449 | C | T | Ref (243,5) | Alt (29,216) | Alt (31,216) | Alt (39,210) | Ref (243,5) | Alt (82,168) |
| 33,109 | G | C,T | Ref (242,6,0) | Alt2 (1,24,221) | Alt2 (3,10,236) | Alt2 (8,10,229) | Ref (245,1,0) | Alt2 (60,0,190) |
| 33,936 | G | A,T | Ref (36,0,0) | Alt2 (0,11,76) | Alt2 (0,18,108) | Alt2 (1,8,54) | Ref (89,2,5) | Alt2 (19,0,25) |
| 36,163 | A | T | Alt (33,216) | Ref (245,5) | Ref (247,1) | Ref (249,1) | Ref (247,3) | Ref (245,1) |
| 36,164 | A | T | Alt (5,244) | Ref (239,11) | Ref (245,5) | Ref (248,2) | Ref (241,7) | Ref (246,0) |
| 36,165 | A | T | Alt (14,233) | Ref (240,9) | Ref (244,5) | Ref (246,3) | Ref (243,7) | Ref (248,1) |
| 37,110 | G | T | Ref (236,5) | Alt (8,201) | Alt (0,213) | Alt (1,207) | Ref (232,7) | Alt (44,151) |
| 37,111 | A | C,G,T | Ref (214,0,16,7) | Alt (22,201,1,25) | Alt (19,213,1,16) | Alt (16,213,0,18) | Ref (231,0,9,6) | Ref (144,87,0,19) |
| 134,508 | T | A | Ref (248,1) | Alt (38,205) | Alt (27,211) | Alt (31,211) | Ref (248,2) | Alt (77,171) |
Call per sample is indicated as Ref: same as our chloroplast assembly; or Alt, Alt2; first or second allele in the ALT column, respectively. Number of reads that support each allele are given in the brackets in the order Ref, Alt, Alt2, Alt3.