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. 2020 Sep 24;11:563800. doi: 10.3389/fimmu.2020.563800

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Copyright © 2020 Paes, Leonov, Partridge, Nicastri, Ternette and Borrow.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Forward and reverse PCPS reactions display unique splice site signatures. (A) Schematic depicting forward and reverse PCPS. Red arrows indicate fusion sites. Amino acid pairings proximal to the fusion site are labeled P1/P1′, P2/P2′ and P3/P3′. (B) Forward PCPS splice site signature. (C) Reverse PCPS splice site signature. In (B) and (C), heat maps show frequencies of amino acid residue pairings at ±1, 2, or 3 aa adjacent to the fusion site. Scale represents the frequency of each amino acid pairing as a percentage of the overall pairings, and amino acids are defined using single letter code.