Table 1.
Synthetic polypeptides subjected to in vitro proteasomal digestion.
| Polypeptide ID | Protein ID | Sequence | Length (aa) |
|---|---|---|---|
| PP1 | sORF-encoded polypeptide: APITD1 | SSCLPCPLSFEKFK | 14 |
| PP2 | Q92879: CUGBP Elav-like family member 1 | EGCSSPMVVKFADTQK | 16 |
| PP3 | Q5CZC0: Fibrous sheath-interacting protein 2 | LVSIQKSIVSRSPIMIDQ | 18 |
| PP4 | P15882: N-chimerin | LTSLVRRATLKENEQIPK | 18 |
| PP5 | sORF-encoded polypeptide: CD81 | LPRFESRVCGHSLPSCTCP | 19 |
| PP6 | HIV-1 CH529 enr: Vif | DQLIHLYYFDCFSESAIRK | 19 |
| PP7 | P37275: Zinc finger E-box-binding homeobox 1 | SLIPVNGRPRTGLKTSQCS | 19 |
| PP8 | Q8TDU5: Putative vomeronasal receptor-like protein 4 | HLPLIHILLLFTQAILVSS | 19 |
| PP9 | HIV-1 IIIB: Vif | ALIKPKQIKPPLPSVRKLTE | 20 |
| PP10 | HIV-1 CH390 enr: Vif | TADQLIHLYYFDCFSESAIRK | 21 |
| PP11 | Q9NW13: RNA-binding protein 28 | IRNLSFKCSEDDLKTVFAQFGA | 22 |
| PP12 | HIV-1 CH945 enr: Vif | LADQLIHLYHFDCFTESAIRNA | 22 |
| PP13 | HIV-1 CH945 enr: Vif mutant | LQPQLIHLYYFDCFSESAIRK | 22 |
| PP14 | HIV-1 NL4-3: Gag | FGEETTTPSQKQEPIDKELYPLA | 23 |
| PP15 | HIV-1 NL4-3: Gag | AAMQMLKETINEEAAEWDRLHPVHA | 25 |
| PP16 | P46013: Antigen KI-67 | KSWADVVKLGAKQTQTKVIKHGPQR | 25 |
| PP17 | Q00887:Pregnancy-specific beta-1-glycoprotein 9 | EMTDLYHYIISYIVDGKIIIYGPAY | 25 |
| PP18 | HIV-1 IIIB: Cryptic ORF | VAAPRLLPCALQQAESCVERSPLALLS | 27 |
| PP19 | P47989: Xanthine dehydrogenase/oxidase | PRKQLRFEGERVTWIQASTLKELLDLK | 27 |
| PP20 | Q92608: Dedicator of cytokinesis protein 2 | YLDTSSRGEQCEPILRTLKALEYVFKFI | 28 |
| PP21 | Q5T7P8: Synaptotagmin-6 | KLKDPSTLGFLEAAVKISHTSPDIPAEVQM | 30 |
| PP22 | HIV-1 NL4-3: Pol | AELELAENREILKEPVHGAYYDPSKDLIAEL | 31 |
| PP23 | Q14894: Thiomorphine-carboxylate dehydrogenase | ALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNG | 34 |
| PP24 | HIV-1 NL4-3: Pol | IRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVAS | 44 |
| PP25 | Q9H8V3: Protein ECT2 | KALKTIKIMEVPVIKIKESCPGKSDEKLIKSVINMDIKVGFVKMESV | 47 |