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. 2020 Oct 8;21:702. doi: 10.1186/s12864-020-07054-3

Table 1.

Genome content of 33 Borrelia bavariensis strains

Strain Date and Ref Source Origin # plasmids # PF32 Assembled length chrom cp26 lp54 lp36 lp17 lp17 + lp28-4 lp25 lp38 lp56 lp28-2 lp28-3 lp28-4 lp28-4 + cp32-1 lp28-6 lp28-7 lp28-8 lp28-9 cp32-1 cp32-3 cp32-3 + lp25 cp32-4 cp32-5 cp32-6 cp32-7 cp32-9 cp/lp32-10 cp32-11 cp32-12
Arh913 2012 I. persulcatus Russia 15 18 1255 906.4 27.3 58.6 22.9 21.5 27.2 27.8 19.4 30.2 21 10.5 * * 8.6 9.3 * 32.5 13.2 18.4
Arh923 2012 I. persulcatus Russia 15 17 1271 906.2 27.3 59.6 21.9 51.1 27.4 14 16.4 26.2 27 10.1 18.4 8.3 7.8 * 34.1 15.7
FujiP2 [87] I. persulcatus Japan 18 18 1324 906.7 27.3 58.7 22.9 21.6 27.4 19.6 30.2 29.8 20.7 17.4 21.4 17.7 5.2 * 8.8 20.1 32.7 13.3 18.4
Hiratsuka 2008 [88] human Japan 16 17 1319 906.3 27.3 59.7 22 51 27.4 22.9 15.8 29.2 26.8 8 27 16.4 7.9 24.9 29.7 16.5
J-14 1995 [88] human Japan 16 16 1306 904 27.3 58.7 22.9 51.6 27.4 20.1 29.1 21 16.9 21.9 20.1 10.1 9.4 32.4 14 19
J-15 1995 [88] human Japan 10 13 1190 903.6 27.3 57.7 22.4 17.8 28.7 27.2 26.6 17 29.9 * * * 31.9
J-20T 1996 [88] I. persulcatus Japan 15 15 1232 906.7 27.3 57.2 32.1 18.1 29.2 28.2 28.9 12.7 6 * 5.3 8.4 7.5 46.6 9.4 8.7
Konnai17° 2011 I. persulcatus Japan 15 15 1228 906.3 27.3 58.6 21.8 51.4 10.7 28.2 24.8 / 21 57 12.5 17 9.4 * 17.1 31.3 13.9 16.9
N346 [89] I. persulcatus Japan 15 14 1194 906 27.2 59.8 18.6 20.4 29.1 24.7 13.6 7.4 5.5 11.4 7.6 14.2 9.3 8.1
NT24 [90] I. persulcatus Japan 18 18 1318 906.9 27.2 58.6 23 21.4 27.4 20.5 30 21 17.8 22 21.7 7.3 7.3 9.9 30.7 32.5 14 19
Prm7019 2012 I. persulcatus Russia 11 15 1151 906.3 27.3 57.9 18.5 21.9 27 24.4 14.3 29.6 8.6 6 * * * * 9.1
Prm7564 2011 I. persulcatus Russia 17 15 1240 906.4 27.3 57.3 20.4 21.1 25 14 15.7 30 8.5 27 10.1 16.4 8.3 7.1 5.5 34.1 5.6
Prm7569 2011 I. persulcatus Russia 13 18 1180 906.1 27.3 57.9 19.8 20.6 26.6 25.4 28.5 30.2 * 8.2 12.3 * * * * 5.2 7 5
Prm965 2013 I. persulcatus Russia 13 16 1171 906.1 27.3 57.9 19.8 20.6 25 30.2 6.3 27.2 7.3 * 9.8 7.2 * * * 20.8 5.9
61VB2 tick Germany 11 13 1264 905.3 27.3 60.4 21.5 26.3 24.3 51 21.2 12.9 54.9 27.8 31.1
A104S 1996 [11] human Netherlands 13 14 1315 902.3 27.1 60.4 21.3 26.3 24.1 50.9 28.2 8.3 54.7 21.1 29.9 31 29.8
A91S 1996 [11] human Netherlands 12 14 1289 905.3 27.3 60.4 21.4 26.5 24.2 50.2 28 10 54.9 21.2 27.4 31.1
DK6 1990 [11] human Denmark 10 13 1251 905.2 27.1 60.2 21.3 26.3 23.9 50.8 21.8 54.8 27.4 31.3
Lubl25 1995 [11] human Slovenia 12 14 1284 905.5 27.3 60.4 21.3 24.5 24.1 50.8 28.4 8.2 54.9 21.2 27.8 30
PBae I 1990 [7] human Germany 10 12 1251 905.4 27.1 60.5 21.4 24.9 32.5 46.8 28.3 54.9 21.2 27.8
PBae II 1990 [11] human Germany 8 13 1139 894.8 26.9 60.4 20.7 25 23.9 49.2 26.5 11.3 * * *
PBar 1988 [6] human Germany 12 14 1278 904.6 27.1 60.4 21.3 25.1 19.6 47.5 27.6 11.3 54.9 21.2 27.5 30
PBi 1984 [91] human Germany 11 13 1280 905.8 27.1 60.4 21.2 24.6 24.1 50.9 22.8 * 28.4 54.9 28.6 31
PBN 1999 [7] human Germany 11 13 1269 902.2 26.7 46.6 21.3 24.6 24.2 49.5 33.5 53.6 27.8 30.9 27.9
PHer I 1989 [11] human Germany 12 14 1287 905.2 27.1 60.3 21.5 24.9 24.2 50.6 27.7 12 54.8 21 27.8 30
PLad 2000 [11] human Germany 12 14 1293 904.9 27.1 60.3 21.3 24.6 24.2 51 22.7 13.6 28.4 54.9 27.5 31.1
PNeb 1988 [7] human Germany 12 14 1289 905.6 27.2 60.6 21.5 25.1 24.3 50.7 28.4 11.7 54.9 21.2 27.8 30
PNi 2000 [6] human Germany 10 12 1240 905.7 27 46.6 21.3 24.6 24.1 48.8 28.4 55 26.9 31.1
PRab 1994 [7] human Austria 11 13 1255 904.5 27 59.8 21.1 24.4 24 50.5 27.8 12 54.9 21.2 27.4
PRof 1989 [6] human Germany 12 14 1288 903.8 27 60.4 21.4 24.6 24.1 50.4 22.6 13.3 26 54.9 27.2 31.1
PTrob 1988 [7] human Slovenia 12 14 1290 905.5 27.2 60.5 21.4 24.4 24.1 51.1 28.2 12.9 54.9 21.2 28 30
PWin 1987 [6] human Germany 12 14 1284 901.6 27.1 60.4 21.1 26 24.1 50.4 27.4 11.3 54.4 21.1 28.6 29.8
PZwi 1994 [6] human Germany 11 13 1273 904.9 27.2 60.4 21.3 24.3 24.2 48.9 28.2 54.3 21 26.7 29.5

The length of the main chromosome (chrom) and each assembled plasmid (of at least 5kb length) is shown. The three strains sequenced with both PacBio and Illumina data are shaded in gray. Date is date of isolation and is followed by the original reference (see Bibliography, if blank: this study). #PF32 is the number of Pfam 32 proteins identified by BLAST (see Methods) in the assembled data and in the contigs and * means a plasmid partition gene of the families (PF32, PF49, PF50 or PF57-62) was identified but no plasmid of at least 5kb length could be assembled. Length are in kb. °: isolate Konnai17 was a mixture of B. afzelii and B. bavariensis, we used clone number 1 which is only B. bavariensis