Table 1. Results of search for Trypanosoma contigs in avian transcriptomes produced by Galen et al. [4].
| NCBI SRA | Specimen number (Sample number) | Contigs identified by ContamFinder | Contigs remaining after TransDecoder and CD-HIT | Parasitemia (%) |
|---|---|---|---|---|
| SRX5582028 | MSB:Bird:47757 (NK227457) | 302 | 211 | - |
| SRX5582029 | MSB:Bird:47825 (NK277525) | 1 | 0 | - |
| SRX5582027 | MSB:Bird:47846 (NK277546) | 0 | 0 | - |
| SRX5582026 | MSB:Bird:47847 (NK277547) | 305 | 202 | - |
| SRX5582025 | MSB:Bird:48018 (NK277722) | 0 | 0 | - |
| SRX5582024 | MSB:Bird:48026 (NK277730) | 107 | 84 | - |
| SRX5582023 | MSB:Bird:48045 (NK277749) | 2 | 0 | - |
| SRX5582038 | DOT23227 (PRS4407) | 0 | 0 | - |
| SRX5582039 | DOT23232 (PRS4412) | 267 | 191 | - |
| SRX5582040 | DOT23233 (PRS4413) | 353 | 232 | - |
| SRX5582016 | DOT23244 (PRS4424) | 1651 | 1134 | 0.012 |
| SRX5582017 | DOT23258 (PRS4438) (blood) | 382 | 261 | - |
| SRX5582018 | DOT23258 (PRS4438) (liver) | 2 | 2 | - |
| SRX5582019 | DOT23268 (PRS4448) | 329 | 221 | - |
| SRX5582020 | DOT23273 (PRS4453) | 1539 | 1041 | 0.002 |
| SRX5582021 | DOT23276 (PRS4456) | 5 | 2 | - |
| SRX5582022 | DOT23337 (SCG271) | 404 | 247 | - |
| SRX5582032 | DOT24378 (SCG296) | 1357 | 1058 | 0.030 |
| SRX5582033 | DOT24402 (SCG320) | 6 | 4 | - |
| SRX5582030 | DOT24420 (SCG338) | 45 | 34 | - |
| SRX5582031 | DOT24422 (SCG340) | 0 | 0 | - |
| SRX5582036 | DOT24449 (SCG367) | 0 | 0 | - |
| SRX5582037 | DOT24451 (SCG369) | 904 | 663 | 0.020 |
| SRX5582034 | DOT24453 (SCG371) | 0 | 0 | - |
| SRX5582035 | DOT24461 (SCG379) | 222 | 156 | - |