Table 1. Deleterious protein-coding variants in strong LD with LD-independent genome-wide significant SNPs associated with hearing difficulty.
Risk Locus | SNP | rsID | MAF | GWAS P-Value | Beta | r2 | Ind. Sig. SNP | Gene Symbol | A.A. Change | CADD |
---|---|---|---|---|---|---|---|---|---|---|
6 | 4:17524570 C/G | rs13147559 | 0.13 | 8.4e-9 | 0.02 | 0.97 | rs13148153 | CLRN2 | Leu113Val | 23.6 |
8 | 6:43273604 A/G | rs2242416 | 0.42 | 1.3e-18 | 0.02 | 1.00 | rs10948071 | CRIP3 | Ile188Thr | 23.8 |
9 | 6:133789728 A/G | rs9493627 | 0.31 | 7.7e-10 | 0.01 | 1.00 | rs9493627 | EYA4 | Gly223Ser | 26 |
13 | 8:82670771 A/G | rs35094336 | 0.08 | 2.5e-08 | 0.02 | 0.97 | rs74544416 | CHMP4C | Ala232Thr | 26.4 |
21 | 11:89017961 A/G | rs1126809 | 0.25 | 4.9e-15 | 0.02 | 1.00 | rs1126809 | TYR | Arg402Gln | 34 |
30 | 22:38121152 A/C | rs9610841 | 0.39 | 1.7e-10 | 0.01 | 1.00 | rs739137 | TRIOBP | Asn863Lys | 22.8 |
30 | 22:38122122 C/T | rs5756795 | 0.39 | NA | NA | 1.00 | rs739137 | TRIOBP | Phe1187Leu | 14.29 |
30 | 22:38485540 A/G | rs17856487 | 0.41 | NA | NA | 0.98 | rs132929 | BAIAP2L2 | Cys252Arg | 11.23 |
31 | 22:50988105 A/G | rs36062310 | 0.04 | 7.9e-16 | 0.04 | 1.00 | rs36062310 | KLHDC7B | Val504Met | 16.21 |