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. 2020 Sep 28;16(9):e1009025. doi: 10.1371/journal.pgen.1009025

Table 1. Deleterious protein-coding variants in strong LD with LD-independent genome-wide significant SNPs associated with hearing difficulty.

Risk Locus SNP rsID MAF GWAS P-Value Beta r2 Ind. Sig. SNP Gene Symbol A.A. Change CADD
6 4:17524570 C/G rs13147559 0.13 8.4e-9 0.02 0.97 rs13148153 CLRN2 Leu113Val 23.6
8 6:43273604 A/G rs2242416 0.42 1.3e-18 0.02 1.00 rs10948071 CRIP3 Ile188Thr 23.8
9 6:133789728 A/G rs9493627 0.31 7.7e-10 0.01 1.00 rs9493627 EYA4 Gly223Ser 26
13 8:82670771 A/G rs35094336 0.08 2.5e-08 0.02 0.97 rs74544416 CHMP4C Ala232Thr 26.4
21 11:89017961 A/G rs1126809 0.25 4.9e-15 0.02 1.00 rs1126809 TYR Arg402Gln 34
30 22:38121152 A/C rs9610841 0.39 1.7e-10 0.01 1.00 rs739137 TRIOBP Asn863Lys 22.8
30 22:38122122 C/T rs5756795 0.39 NA NA 1.00 rs739137 TRIOBP Phe1187Leu 14.29
30 22:38485540 A/G rs17856487 0.41 NA NA 0.98 rs132929 BAIAP2L2 Cys252Arg 11.23
31 22:50988105 A/G rs36062310 0.04 7.9e-16 0.04 1.00 rs36062310 KLHDC7B Val504Met 16.21