KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Chemicals, Peptides, and Recombinant Proteins | ||
[13C6]-D-glucose | Cambridge Isotope Laboratories | Cat#CLM-1396–1 |
2-hydrazinoquinoline | Sigma-Aldrich | Cat#CDS000062 |
Acetonitrile, Optima LC/MS | Fisher Scientific | Cat# A955 |
Water, Optima LC/MS | Fisher Scientific | Cat# W6 |
Methanol, Optima LC/MS | Fisher Scientific | Cat# A456 |
Ammonium hydroxide, Optima LC/MS | Fisher Scientific | Cat#A470 |
Formic acid, Optima LC/MS | Fisher Scientific | Cat#A117 |
Acetic Acid, Glacial | Fisher Scientific | Cat#A38 |
Ammonium hydroxide, Optima LC/MS | Fisher Scientific | Cat#A470 |
Deposited Data | ||
13C isotope labeling data (low-infusion) | Hui et al., 2017 | https://doi.org/10.1038/nature24057 |
13C isotope labeling data (high-infusion) | This paper | https://github.com/LocasaleLab/Lactate_MFA/blob/master/data/data_collection_from_Dan.xlsx |
Time-series concentration data of circulating metabolites in plasma | This paper | https://github.com/LocasaleLab/Lactate_MFA/blob/master/data/related_data_from_dan.xlsx |
Experimental Models: Organisms/Strains | ||
Mouse: C57BL/6J | The Jackson Laboratory | Stock No. 000664 |
Mouse: Pax7CreER-T2 | Laboratory of Chen-Ming Fan, Carnegic Institution for Science | N/A |
Mouse: p53fl/fl | Laboratory of Anton Berns, the Netherlands Cancer Institute | N/A |
Mouse: LSL-NrasG12D | The Jackson Laboratory | Stock No. 008304 |
Software and Algorithms | ||
Sieve 2.0 | ThermoFisher Scientific | https://portal.thermo-brims.com/index.php/component/thermosoftwares/thermosoftware/67?Itemid=121 |
NumPy | Open source software | https://numpy.org/ |
SciPy | Open source software | https://www.scipy.org/ |
Matplotlib | Open source software | https://matplotlib.org/ |
xlrd | python-excel | https://github.com/python-excel/xlrd |
tqdm | tqdm | https://github.com/tqdm/tqdm |
python-ternary | marcharper | https://github.com/marcharper/python-ternary |
Docker | Docker Inc. | https://www.docker.com/ |