Chemicals, Peptides, and Recombinant Proteins |
[13C6]-D-glucose |
Cambridge Isotope Laboratories |
Cat#CLM-1396–1 |
2-hydrazinoquinoline |
Sigma-Aldrich |
Cat#CDS000062 |
Acetonitrile, Optima LC/MS |
Fisher Scientific |
Cat# A955 |
Water, Optima LC/MS |
Fisher Scientific |
Cat# W6 |
Methanol, Optima LC/MS |
Fisher Scientific |
Cat# A456 |
Ammonium hydroxide, Optima LC/MS |
Fisher Scientific |
Cat#A470 |
Formic acid, Optima LC/MS |
Fisher Scientific |
Cat#A117 |
Acetic Acid, Glacial |
Fisher Scientific |
Cat#A38 |
Ammonium hydroxide, Optima LC/MS |
Fisher Scientific |
Cat#A470 |
Deposited Data |
13C isotope labeling data (low-infusion) |
Hui et al., 2017 |
https://doi.org/10.1038/nature24057 |
13C isotope labeling data (high-infusion) |
This paper |
https://github.com/LocasaleLab/Lactate_MFA/blob/master/data/data_collection_from_Dan.xlsx |
Time-series concentration data of circulating metabolites in plasma |
This paper |
https://github.com/LocasaleLab/Lactate_MFA/blob/master/data/related_data_from_dan.xlsx |
Experimental Models: Organisms/Strains |
Mouse: C57BL/6J |
The Jackson Laboratory |
Stock No. 000664 |
Mouse: Pax7CreER-T2
|
Laboratory of Chen-Ming Fan, Carnegic Institution for Science |
N/A |
Mouse: p53fl/fl
|
Laboratory of Anton Berns, the Netherlands Cancer Institute |
N/A |
Mouse: LSL-NrasG12D
|
The Jackson Laboratory |
Stock No. 008304 |
Software and Algorithms |
Sieve 2.0 |
ThermoFisher Scientific |
https://portal.thermo-brims.com/index.php/component/thermosoftwares/thermosoftware/67?Itemid=121 |
NumPy |
Open source software |
https://numpy.org/ |
SciPy |
Open source software |
https://www.scipy.org/ |
Matplotlib |
Open source software |
https://matplotlib.org/ |
xlrd |
python-excel |
https://github.com/python-excel/xlrd |
tqdm |
tqdm |
https://github.com/tqdm/tqdm |
python-ternary |
marcharper |
https://github.com/marcharper/python-ternary |
Docker |
Docker Inc. |
https://www.docker.com/ |