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. Author manuscript; available in PMC: 2021 Oct 7.
Published in final edited form as: J Am Chem Soc. 2020 Sep 23;142(40):16999–17014. doi: 10.1021/jacs.0c06165

Table 4. Emission Energies of the matched and mismatched duplexes.

Vertical Emission Energies (VEE) and oscillator strengths (f) at the QM(PCM/M052X/6–31G(d) Linear Response (LR) level of theory are compared to those computed at the State Specific (SS)-PCM. Charge Transfer character (CT in a.u), radiative lifetime (τR in ns) and computed fluorescence lifetimes (c<τ> in ns) of the different minima for the different duplexes.

(−)PBS (+)PBS Description. LRVEE (eV) LRf LRCT SSVEE (eV) SSf SSτR c<τ>
Match AthGA TCT Min-ππ* 3.28 0.07 0.03 3.20 0.05 74 13.4
Min-CT (thG→A) 3.77 0.01 0.58 2.53 0.00
TthGT ACA Min-ππ*modell 3.43 0.08 0.01 3.32 0.05 64 9.7
Min-CTmodel2 (thG→T) 3.34 0.00 0.86 1.68 0.00
CthGC GCG Min-ππ* 3.42 0.08 0.01 3.33 0.06 52 8.3
Min-CT (thG→C) a3.88 0.03 0.72 2.10 0.01
GthGG CCC Min-ππ* 3.47 0.08 0.03 3.33 0.05 64 9.6
Min-CT (G→thG) 3.15 0.02 −0.22 2.80 0.01
Mismatched GthGG CTC Min-ππ* b
Min-CT (G→thG) 4.24 0.07 −0.22 2.91 0.01 7000
AthGA TAT Min-ππ* 3.67 0.11 0.03 3.39 0.08 29 14.0
Min-CT c
TthGT ATA g1Min-ππ* 3.46 0.07 0.04 3.32 0.05 68 23.7
g1Min-ct (thG→T) 3.36 0.06 0.06 3.24 0.04
TthGT AAA g3Min-ππ* 3.50 0.08 0.01 3.29 0.06 62 22.8
g1Min-ct (thG→T) 2.93 0.01 0.16 2.80 0.01
TthGT AGA Min-ππ* 3.63 0.11 0.00 3.33 0.08 28 2.8
Min-CT c
thG+water Min-ππ* 3.60 0.11 - 3.22 0.08 31 15.8
thG+2H2O Min-ππ* 3.45 0.11 - 3.15 0.08 31 15. 8

Notes: a) No real minimum but a low energy gradient region was found, b) no clear ππ * minimum was found, c) no clear CT minimum was located. The radiative lifetime (τR) was estimated by using a simplified version of the Strickler-Berg formula: TheorτR=1kR with kR=4ΔE33c3μ2, where ΔE is the vertical emission energy and the dipole moment of the transition. The computed lifetime is calculated by: c<τ> = kR×QY, where QY is the experimental quantum yield. Further details on the calculations are given in section 4 of SI.