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Comparison of the different methods’ performances in the reaction chain with four species dataset.
| TP | FP | TPR | FPR | PPV | ACC | |
| CLR | 3 | 0 | 1 | 0 | 1 | 1 |
| ARACNE | 3 | 0 | 1 | 0 | 1 | 1 |
| MRNET | 3 | 1 | 1 | 0.33 | 0.75 | 0.833 |
| MI3 | 2 | 3 | 0.667 | 1 | 0.4 | 0.333 |
| MIDER | 3 | 0 | 1 | 0 | 1 | 1 |
| MRMSn | 3 | 0 | 1 | 0 | 1 | 1 |
| RRMRNET | 3 | 0 | 1 | 0 | 1 | 1 |
| PCA-CMI | 3 | 1 | 1 | 0.333 | 0.75 | 0.833 |
| RWRNET | 3 | 0 | 1 | 0 | 1 | 1 |
