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. 2020 Sep;30(9):1258–1273. doi: 10.1101/gr.260497.119

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© 2020 Aganezov et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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Figure 5. — Structural and copy number variants in COSMIC census genes. (A) Comparison of the number of COSMIC census genes containing SVs, as well as the number of SVs within COSMIC census genes, across inferred SV call set in 51T and N (parenthetical), SKBR3, and 48T, and SVs reported by RCK as being present in the karyotype graphs reconstructed with either HATCHet or TitanCNA copy number profiles in 51T. (B) Comparison of the number of COSMIC census genes with either allele-specific deletions or amplifications between copy number profiles from HATCHet, RCK + HATCHet, TitanCNA, and RCK + TitanCNA in 51T.