Table 2. Summary of sequences analysis.
| Sample | Raw reads | Raw bases | Clean reads | Clean bases | Q20(%) | Q30(%) | GC content(%) |
|---|---|---|---|---|---|---|---|
| F1 | 46620884 | 7039753484 | 46118582 | 6906670060 | 97.98 | 93.95 | 49.18 |
| F2 | 57149480 | 8629571480 | 56580896 | 8470705187 | 97.99 | 93.99 | 49.60 |
| F3 | 55573022 | 8391526322 | 54997656 | 8228952151 | 97.99 | 94.00 | 49.36 |
| F4 | 55056242 | 8313492542 | 54491194 | 8154164513 | 98.08 | 94.22 | 49.47 |
| F5 | 56702058 | 8562010758 | 56105974 | 8393382060 | 98.04 | 94.13 | 49.55 |
| S1 | 49655296 | 7497949696 | 49037308 | 7337067610 | 97.76 | 93.46 | 49.69 |
| S2 | 53680550 | 8105763050 | 53094284 | 7942035364 | 97.93 | 93.85 | 49.57 |
| S3 | 55210500 | 8336785500 | 54653148 | 8176427560 | 97.81 | 93.56 | 49.74 |
| S4 | 51259504 | 7740185104 | 50524030 | 7559072542 | 97.78 | 93.51 | 50.11 |
| S5 | 51798836 | 7821624236 | 51051630 | 7635673150 | 97.83 | 93.63 | 50.18 |
| Total | 532706372 | 80438662172 | 526654702 | 78804150197 | --- | --- | --- |