Table 1. Selection of adjusted p-value cutoff for differentially expressed genes.
The six most differentially expressed genes with respect to DMSO in each treatment at time 0 are shown in ascending order of their Voom score (log10(FDR)). Immediate Early Genes are marked in red. Differentially expressed genes according to the cutoff for FDR corrected p-value are marked in bold.
T_0 | TM_0 | M_0 | TW_0 | MW_0 | W_0 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
FOS | -6 | BCAN | −17 | ATXN2 | -3 | EGR1 | −54 | EGR1 | −53 | EGR1 | −53 |
MYC | -3 | FOS | −17 | JUN | -2 | JUN | −26 | JUN | −28 | IER2 | −20 |
TOB1 | -3 | VIM | −17 | ZNF592 | -1 | IER2 | −23 | IER2 | −17 | JUN | −19 |
KLF4 | -2 | ETS1 | −15 | ZHX2 | -1 | JUNB | −17 | PDCD7 | −17 | C17O | −16 |
SGK1 | -2 | MSN | −13 | SCAF4 | -1 | PDCD7 | −16 | ZFP36 | −15 | ZFP36 | −16 |
PRDM1 | -2 | NCAN | −10 | NAT8L | -1 | C17ORF91 | −16 | JUNB | −14 | PDCD7 | −15 |