Table 2.

Comparison of the identified proteins with the earlier studies. The proteins shown in different proteomics analysis have been categories as PA (the proteins which align with 2DE analysis data) and RNAPII (the proteins which align with RNAP-II interactome data).

This study		Chromatin enrichment Kim et al., 2011		Gasch et al., 2001		Jelinsky et al., 1999
(PA)	(RNAPII)	(PA)	(RNAPII)	(PA)	(RNAPII)	(PA)	(RNAPII)
Ipp1, Tdh2, Tdh3, Fba1, YNL134C, Adh1, Tif1, Tdh2, Eno2, Gnd1, Eno1, Vma2, Cys4, Pdc1, Vma1, Ssc1, Tkl1, Tpi1, Adk1, Vma4, RPS0A, Spe3, Fba1, Pgk1, Eno2, Gdh1, Pgi1, Frs1, Bmh1, Rpp0, Stm1, Rnr4, Ilv5, Ura1, Cys3, Hsp60, Pdc1, Ssb2, Trr1, Tsa1, Pre9, Hxk2, Hsc82, Gpm1, Gpd1, Sti1, Sse1, Oye3, Ssa1	Tcp1, Ssb2, Nop58, Tdh3, Tdh2, Adh1, Rpp0, Rtr1, Rps2, Sam1, Spt4, Spt6, Lsm1, Iwr1, Ssf2, Kch1, Npa1, Ire1, Adh2, Ssa2, Tef2, TFIIF, Tfg2, Tip49 (Rvb1), Ssb1, Kar2, Cad1, Cct7	Cys3, Ilv5, Stm1, Ura7, Vma2, Rnr4, Bmh1, Hsp60, Pdc1, Rpp0, Ssb1, Ssb2, Ura7, Rvb2	Rvb2 (Rvb1), Ssb1	Trr1, Oye2, Tsa1, Sti1, Hsc82, Kar2, Pre9, Sse2, Tps1, Gpd1, Hxk1, Gpm1, Rnr4	Kar2	Ssa1, Cad1, Rnr1, Rnr2, Oye3, Cct8, Gdh2, Pre3	Cad1, Cct8 (Cct7)