Table 2.
Characteristics of the 29 polymorphic microsatellite loci isolated from Indian jujube (Ta, optimized annealing temperature).
| SSR Locus | Primers (5’→3′) | Fluorophore for Li-Cor system | Fluorophore for ABI system | Allelic size (bp) | Repeat Motif | Ta (°C) | GenBank Accession No. |
|---|---|---|---|---|---|---|---|
| Zma30 | F: ATATTTTCGGCTCCTCACCG R: ATGTGAAGATGACCCGACCG |
IRDye | 6-FAM | 325–374 | (GA)16 | 58 | MG385144 |
| Zma32 | F: TGTTTTCTTCTATGGCACAG R: ATGACGAAGAACCCTGAAGC |
IRDye | HEX | 222–350 | (AC)4 (AG)25N (CT)14 (AT)14 | 58 | MG385145 |
| Zma41 | F: GTGGTGACCGGGAATCGTG R: GGAGTGAATAGTGACCCGAGG |
IRDye | NED | 180 | (GA)23 | 58 | MG385146 |
| Zma51 | F: GTGGGAAGTTTTTGACGCCGCT R: GTGAGTGCACAGTGGCACCT |
IRDye | 6-FAM | 290–314 | (AG)19 | 58 | MG385147 |
| Zma53 | F: TGAATAGTGACCGACGGGT R: TATGGTGGTCCGGTGCATG |
IRDye | HEX | 188–204 | (AG)18 | 58 | MG385148 |
| Zma57 | F: CCTAAGCTTTCATGTTCCCTCC R: GCAATGATCCCCAAGCTGTC |
IRDye | HEX | 196–226 | (AG)17 | 58 | MG385149 |
| Zma58 | F: TACACCATGTGCCAGCTCT R: GAGAGTAGGCCACGTCAAG |
IRDye | 6-FAM | 288–310 | (TC)29 (AC)4 | 58 | MG385150 |
| Zma59 | F: CAACAATTTGCGGCTAACTC R: GAGAAGAAGAAGCCATGTGT |
IRDye | NED | 165–181 | (AG)18 | 58 | MG385151 |
| Zma73 | F: AATTTGGGTGGCCGGATGGA R: TTCGACCAATGGGGAAAGGAG |
IRDye | NED | 176–200 | (AG)27 | 58 | MG385152 |
| Zma93 | F: GCTACATCCTACACAACGCCT R: TGCAATTCACCAACTGGCACA |
IRDye | HEX | 233–275 | (AG)18 | 58 | MG385153 |
| Zma122 | F: ACCATATAGCCAACCCCTGGT R: CCCTGATCCATGCAAGCGT |
IRDye | 6-FAM | 254–296 | (AG)28 | 58 | MG385154 |
| Zma131 | F: TCCTGTCATGGGCTAGCTG R: CCTCGAAAAACAACCCCTCC |
IRDye | NED | 143–174 | (AG)22 | 58 | MG385155 |
| Zma147 | F: TCCTCCTGGACCGACACGT R: AACCGACCTCGTGGAGTGCA |
IRDye | HEX | 249–265 | (AG)25 | 58 | MG385156 |
| Zma148 | F: GGATGGAGAAAGACTACAAATTC R: CTGTTCGCATGAACGTGGCGAG |
IRDye | HEX | 214–250 | (AG)29 | 58 | MG385157 |
| Zma158 | F: GCCGGAAGTTTCTACGGCT R: TTGCCTCTCGTTGCCTTGC |
IRDye | NED | 125–135 | (AG)18 | 58 | MG385158 |
| Zma166 | F: AGAGGCATTGCTTCGCTGGA R: TCCAAACGTACAAGGCTTCGT |
IRDye | HEX | 231–255 | (AG)11N (GT)5 (AT)21 | 58 | MG385159 |
| Zma167 | F: CGAAGCTTTAGCCAGCTTACGT R: TTCACTCCCTCCCCCAACG |
IRDye | 6-FAM | 290–322 | (AG)17N (AG)19 | 58 | MG385160 |
| Zma173 | F: AGACGAAAAACGGGGGTGG R: CCATTTGGACCAGCCACGT |
IRDye | NED | 182–190 | (AG)25 | 58 | MG385161 |
| Zma180 | F: CCAGCGTGTGCATGGTTGG R: GGCAAACAGTGTCACCCACA |
IRDye | NED | 155 | (AG)24 | 58 | MG385162 |
| Zma185 | F: TCCTTCTCTGCGAATGGCA R: TCAAATCCTCCAAACCCCA |
IRDye | HEX | 188–200 | (AG)20 | 58 | MG385163 |
| Zma187 | F: AAGAGAAACTCCAGCTGCT R: TGTAACAGAGGCCATACACA |
IRDye | HEX | 194–241 | (AG)50 | 58 | MG385164 |
| Zma202 | F: CATGTGGCTCGGTGGTGGT R: TAAAAAGGGGCCCGCAAGT |
IRDye | NED | 172–182 | (AG)19 | 58 | MG385165 |
| Zma206 | F: AGCATCCAAACAGAGCGGGA R: CGAGAGACTCGAGCACTGC |
IRDye | NED | 156–180 | (AG)20 | 58 | MG385166 |
| Zma258 | F: CGTTAATCCAAGCAAACCCCAC R: AGTGCTCTGTCCTTGATCCCCA |
IRDye | 6-FAM | 270–310 | (AG)19 | 58 | MG385167 |
| Zma262 | F: TCCAATAGGAGCCTCACCA R: TCGACAAAAGGTCCCGAGG |
IRDye | NED | 166 | (AG)31 | 58 | MG385168 |
| Zma264 | F: AAGAGGATGCGGAGTTGGT R: CAACCTGTCTCGTGAGTGC |
IRDye | HEX | 220–255 | (AG)22 | 58 | MG385169 |
| Zma265 | F: AGAAGGTTGGGAAGGAGGT R: GCTTTGCTCGACCCCAACA |
IRDye | HEX | 190–212 | (AG)17 | 58 | MG385170 |
| Zma282 | F: ACGGTGTTTCTGGTGGACC R: GATCGACCCCTGGGAGTGA |
IRDye | HEX | 204–236 | (AG)21 | 58 | MG385171 |
| Zma283 | F: CCAATTGTTCAAGGTGTGAGAG R: TCACTTGCCACATTACAGAC |
IRDye | NED | 166–190 | (CT)10N [32]10 (TTG)7 | 58 | MG385172 |