Table 3.
MetaQC quality control of 6 expression profiling datasets and 4 methylation profiling datasets.
| IQC | EQC | CQCg | CQCp | AQCg | AQCp | SMR | |
|---|---|---|---|---|---|---|---|
| Gene expression profiling | |||||||
| GSE75037 | 5.27 | 3.23 | 106.65 | 158.86 | 32.71 | 90.88 | 1.62 |
| GSE32863 | 4.38 | 3.16 | 64.14 | 146.51 | 26.46 | 96.74 | 2.42 |
| GSE33532 | 4.81 | 3.23 | 59.25 | 171.49 | 25.50 | 84.37 | 2.86 |
| GSE43458 | 6.09 | 1.10 | 101.10 | 114.30 | 19.53 | 29.46 | 3.92 |
| GSE30219 | 6.64 | 3.71 | 83.97 | 107.69 | 47.87 | 63.89 | 4.33 |
| GSE10072 | 8.06 | 9.19 | 12.24 | 8.92 | 9.78 | 14.52 | 7.76 |
| Methylation profiling | |||||||
| GSE32861 | 9.80 | 5.00 | 19.24 | 41.01 | 6.17 | 24.77 | 3.28 |
| GSE49996 | 6.22 | 4.96 | 46.70 | 42.02 | 8.67 | 33.56 | 3.14 |
| GSE63384 | 7.56 | 3.05 | 24.57 | 33.79 | 3.45 | 17.84 | 5.67 |
| GSE62948 | 5.11 | 3.63 | 59.25 | 60.27 | 29.49 | 84.37 | 3.25 |
IQC – internal quality control; EQC – external quality control; CQC – consistency quality control; AQC – accuracy quality control; SMR – standardized mean rank score.