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. 2020 Mar 18;17(8):1196–1213. doi: 10.1080/15476286.2020.1737442

Table 1.

Definition of several features of the most common tRNA-derived fragments.

Name and type Length (nt) Domain of origin Endonucleases Known Biological Functions
tRNA fragment 1 (tRF-1) 13-30 Generated from pre-tRNA processing of trailer sequence RNase Z (ELAC2)
  • Gene silencing not sequence-dependent

  • Inhibition of T cell activation

  • Cancer biomarker

  • Associated to cancer development

  • Tumour suppression in response to oncogenic stress

tRNA fragment 3 (tRF-3) 13-30 Generated from mature tRNA by endonucleolytic 3ʹ-end cleavage in the TΨC loop
  • DICER

  • No identified endonucleases responsible for TΨC loop cleavage

  • Gene and retrotransposon silencing

  • Ribosome biogenesis

  • Translation inhibition

  • Enhance specific transcripts related to cancer

  • Associated to cancer development and lymphoma progression

  • Inhibition of T cell activation

  • Increase cell viability

  • Tumour suppression in response to oncogenic stress

tRNA fragment 5 (tRF-5) 13-30 Generated from mature tRNA by endonucleolytic 5ʹ-end cleavage close to the D loop
  • DICER

  • No identified endonucleases responsible for D loop cleavage

  • Gene silencing

  • miRNA-like target inhibition

  • Translation inhibition

  • Enhance virus replication

  • Associated to cancer development and lymphoma progression

  • Inhibition of T cell activation

  • May act as immune signalling molecule

  • Tumour suppression in response to oncogenic stress

3ʹ tRNA halves 30-40 Generated from mature tRNA by endonucleolytic cleavage in the anticodon loop. Start from the anticodon loop and terminate in the 3ʹ-end of mature tRNA Angiogenin and Rny1
  • Translation inhibition

  • Stress-induced granule formation

  • Enhance virus replication

  • Tumour suppression in response to oncogenic stress

5ʹ tRNA halves 30-40 Generated from mature tRNA by endonucleolytic cleavage in the anticodon loop. Start from the 5ʹ-end and terminate in the anticodon loop of mature tRNA Angiogenin and Rny1
  • Translation inhibition

  • Enhance transcripts involved in stress response

  • Stress-induced granule formation

  • Associated to cell motility decrement

  • Associated to cancer progression