Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference |
Identifiers | Additional information |
|---|---|---|---|---|
| Chemical compound, drug | Alpha-Bungarotoxin | Invitrogen | Invitrogen:B1601 | |
| Chemical compound, drug | Tricaine | Sigma-Aldrich | Sigma-Aldrich:MS-222 | |
| Genetic reagent (Danio rerio) | Tg(elavl3:nls-GCaMP6s)mpn400 | Förster et al., 2017 | ZFIN ID: ZDB-ALT-170731-37 | |
| Genetic reagent (Danio rerio) | Tg(atoh7:Gal4-VP16)s1992t (ath5:Gal4) | Del Bene et al., 2010 | ZFIN ID: ZDB-FISH-150901-27082 | |
| Genetic reagent (Danio rerio) | Tg(UAS:GCaMP6s)mpn101 | Thiele et al., 2014 | ZFIN ID: ZDB-FISH-150901-22562 | |
| Genetic reagent (Danio rerio) | Et(E1b:Gal4-VP16)s1101t | Scott et al., 2007 | ZFIN ID: ZDB-FISH-150901-5255 | |
| Genetic reagent (Danio rerio) | Tg(elavl3:lyn-tagRFP)mpn404 | Dal Maschio et al., 2017 | ZFIN ID: ZDB-ALT-170731-38 | |
| Genetic reagent (Danio rerio) | Tg(isl2b:Gal4-VP16, myl7:TagRFP)zc65 | Fujimoto et al., 2011 | ZFIN ID: ZDB-FISH-150901-13523 | |
| Genetic reagent (Danio rerio) | Tg(14xUAS:EGFP)mpn100 | Thiele et al., 2014 | ZFIN ID: ZDB-GENO-140812-1 | |
| Genetic reagent (Danio rerio) | Tg(Shha:GFP)t10 | Neumann and Nuesslein-Volhard, 2000 | ZFIN ID: ZDB-GENO-060207-1 | |
| Genetic reagent (Danio rerio) | Tg(UAS:mCherry)s1984t | Heap et al., 2013 | ZFIN ID: ZDB-FISH-150901-14417 | |
| Genetic reagent (Danio rerio) | Tg(brn3c:GAL4, UAS:gap43-GFP)s318t (BGUG) | Xiao and Baier, 2007 | ZFIN ID: ZDB-ALT-070423-6 | |
| Genetic reagent (Danio rerio) | Tg(UAS:paGFP,nlsGCaMP6f)mpn104 (UAS:FuGIMA-f) | This paper | Tol2-mediated transgenesis | |
| Software, algorithm | Imaris | Bitplane | http://www.bitplane.com | |
| Software, algorithm | ImageJ/Fiji | Schindelin et al., 2012 | http://fiji.sc | |
| Software, algorithm | MorphoLibJ (ImageJ plugin) | Legland et al., 2016 | http://imagej.net/morpholibj | |
| Software, algorithm | PsychoPy2 | Peirce, 2007 | http://www.psychopy.org | |
| Software, algorithm | Python 2.7 | Python.org | http://www.python.org | |
| Software, algorithm | Python 3 | Python.org | http://www.python.org | |
| Software, algorithm | CaImAn (Calcium Imaging Analysis toolbox) | Giovannucci et al., 2017 | http://github.com/flatironinstitute/CaImAn | |
| Software, algorithm | NeuTube | Feng et al., 2015 | http://www.neutracing.com | |
| Software, algorithm | Advanced Normalization Tools (ANTs) | Avants et al., 2010 | http://stnava.github.io/ANTs | |
| Software, algorithm | RStudio Version 1.0.136 | RStudio | http://www.rstudio.com | |
| Software, algorithm | R package nat (NeuroAnatomy Toolbox) | Bates et al., 2020 | http://jefferis.github.io/nat/ | |
| Software, algorithm | 3DSlicer | Fedorov et al., 2012 | http://www.slicer.org | |
| Software, algorithm | Plotly Chart Studio | Plotly.com | http://www.plotly.com | |
| Software, algorithm | Custom tracking and behavior analysis code | Mearns et al., 2020 | http://bitbucket.org/mpinbaierlab/mearns_et_al_2019 |