Table 3.
Currently supported Protein Ontology RESTful API endpoints.
| API Operation Group | API Access Path* | Description |
|---|---|---|
| PRO Terms | /pros | Search PRO terms. |
| /pros/{proIds} | Return PRO terms by IDs. | |
| Proteoform Terms | /proforms/modification | Returns a list of modified protein forms. |
| /proforms/modification/phosphorylated | Returns a list of phosphorylated protein forms. | |
| /proforms/modification/methylated | Returns a list of methylated protein forms. | |
| /proforms/modification/acetylated | Returns a list of acetylated protein forms. | |
| /proforms/modification/ubiquitinated | Returns a list of ubiquitinated protein forms. | |
| /proforms/modification/glycosylated | Returns a list of glycosylated protein forms. | |
| /proforms/orthoisoform | Returns a list of ortho-isoform protein forms. | |
| /proforms/orthomodform | Returns a list of ortho-modform protein forms. | |
| /proforms/sequence | Returns a list of sequence level protein forms. | |
| /proforms/organism-sequence | Returns a list of organism-sequence level protein forms. | |
| Protein Evolutionary Terms | /proevos/family | Returns a list of family level protein terms. |
| /proevos/gene | Returns a list of gene level protein terms. | |
| /proevos/organism-gene | Returns a list of organism-gene level protein terms. | |
| Protein Complex Terms | /procomps/organism | Returns a list of organism specific protein complex terms. |
| /procomps | Returns a list of organism non-specific protein complex terms. | |
| Database Cross-references | /dbxrefs/EcoCyc_ID | Returns a list of PRO terms with EcoCyC ID as cross-reference. |
| /dbxrefs/HGNC_ID | Returns a list of PRO terms with HGNC ID as cross-reference. | |
| /dbxrefs/MGI_ID | Returns a list of PRO terms with MGI ID as cross-reference. | |
| /dbxrefs/Ontology_ID | Returns a list of PRO terms with Ontology ID as cross-reference. | |
| /dbxrefs/PANTHER_ID | Returns a list of PRO terms with PANTHER ID as cross-reference. | |
| /dbxrefs/PIRSF_ID | Returns a list of PRO terms with PIRSF ID as cross-reference. | |
| /dbxrefs/PMID | Returns a list of PRO terms with PMID as cross-reference. | |
| /dbxrefs/Reactome_ID | Returns a list of PRO terms with Reactome ID as cross-reference. | |
| /dbxrefs/NCBITaxon_ID | Returns a list of PRO terms with NCBI Taxon ID as cross-reference. | |
| /dbxrefs/UniProtKB_ID | Returns a list of PRO terms with UniProtKB ID as cross-reference. | |
| PRO Annotation File | /paf/{proIds} | Returns annotations for the given PRO ID(s). |
| OBO File | /obo/{proIds} | Returns PRO term in OBO format for the given PRO ID(s). |
| DAG | /dag/parent/{proIds} | Returns direct parent PRO terms by the given PRO ID(s). |
| /dag/ancestor/{proIds} | Returns direct and indirect parent PRO terms by the given PRO ID(s). | |
| /dag/children/{proIds} | Returns direct children PRO terms by the given PRO ID(s). | |
| /dag/descendant/{proIds} | Returns direct and indirect children PRO terms by the given PRO ID(s). | |
| /dag/hierarchy/{proId} | Returns hierarchy of PRO terms by the given PRO ID. |