Table 1.
Species | Family | Sample Location | Latitude | Longitude | Collection Date | Sequence Library Size (reads) | # Contigs | N50 Contigs | Contigs Matching Viral Genomes E < 10−20 | Reads Mapped to Viral Contigs |
---|---|---|---|---|---|---|---|---|---|---|
Cucumaria miniata | Cucumariidae | Salish Sea | 48.2333 N | 122.7917 W | 7 January 2016 | 1,686,849 | 5394 | 811 | 3 | 247,494 |
Apostichopus californicus * | Stichopodidae | Ketchikan | 55.4351 N | 131.9481 W | 26 October 2016 | 897,618 | 3431 | 804 | 11 | 195,230 |
Apostichopus californicus | Stichopodidae | Ketchikan | 55.4351 N | 131.9481 W | 26 October 2016 | 1,019,071 | 3900 | 880 | 2 | 179,175 |
Holothuria scabra | Holothuridae | Amity Banks | 27.4115 S | 153.4344 E | 10 December 2015 | 822,244 | 21,777 | 838 | 1 | 368 |
Synaptula recta | Synaptidae | Dunwich | 27.4952 S | 153.3985 E | 10 December 2015 | 983,151 | 19,760 | 847 | 0 | 299 |
Holothuria difficilis | Holothuridae | Amity Banks | 27.4115 S | 153.4344 E | 10 December 2015 | 794,579 | 5803 | 846 | 1 | 301 |
Stichopus horrens | Stichopodidae | Amity Banks | 27.4115 S | 153.4346 E | 10 December 2015 | 1,577,532 | 21,194 | 817 | 2 | 423 |
Holothuria atra | Holothuridae | Heron Island | 23.4441 S | 151.9113 E | 19 December 2015 | 875,840 | 18,866 | 793 | 1 | 345 |
Holothuria pardalis | Holothuridae | Dunwich | 27.4952 S | 153.3985 E | 10 December 2015 | 1,467,795 | 7424 | 896 | 0 | 306 |
The * indicates that the specimen was affected by sea cucumber wasting (SCW).