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. 2020 Sep 22;12(9):1057. doi: 10.3390/v12091057

Table 1.

Specimens collected for viral metagenomics survey and library characteristics.

Species Family Sample Location Latitude Longitude Collection Date Sequence Library Size (reads) # Contigs N50 Contigs Contigs Matching Viral Genomes E < 10−20 Reads Mapped to Viral Contigs
Cucumaria miniata Cucumariidae Salish Sea 48.2333 N 122.7917 W 7 January 2016 1,686,849 5394 811 3 247,494
Apostichopus californicus * Stichopodidae Ketchikan 55.4351 N 131.9481 W 26 October 2016 897,618 3431 804 11 195,230
Apostichopus californicus Stichopodidae Ketchikan 55.4351 N 131.9481 W 26 October 2016 1,019,071 3900 880 2 179,175
Holothuria scabra Holothuridae Amity Banks 27.4115 S 153.4344 E 10 December 2015 822,244 21,777 838 1 368
Synaptula recta Synaptidae Dunwich 27.4952 S 153.3985 E 10 December 2015 983,151 19,760 847 0 299
Holothuria difficilis Holothuridae Amity Banks 27.4115 S 153.4344 E 10 December 2015 794,579 5803 846 1 301
Stichopus horrens Stichopodidae Amity Banks 27.4115 S 153.4346 E 10 December 2015 1,577,532 21,194 817 2 423
Holothuria atra Holothuridae Heron Island 23.4441 S 151.9113 E 19 December 2015 875,840 18,866 793 1 345
Holothuria pardalis Holothuridae Dunwich 27.4952 S 153.3985 E 10 December 2015 1,467,795 7424 896 0 306

The * indicates that the specimen was affected by sea cucumber wasting (SCW).