Table 3.
PoAstV3 detection frequency and RT-qPCR mean Cq and Cq range by environmental sample type over time.
Age (wks a) | Pens | Feeders | Hallway | Load-Out Chute | ||||
---|---|---|---|---|---|---|---|---|
% | Mean Cq c | % | Mean Cq | % | Mean Cq | % | Mean Cq | |
(N b) | (Range) | (N) | (Range) | (N) | (N) | |||
3 | 100% | 31.01 | 100% | 30.25 | 100% | 31.07 | 100% | 29.10 |
(8 of 8) | (29.33–32.43) | (8 of 8) | (27.19–34.70) | (1 of 1) | (1 of 1) | |||
5 | 63% | 32.83 | 88% | 32.17 | 100% | 29.89 | 100% | 30.28 |
(5 of 8) | (30.12–34.77) | (7 of 8) | (27.63–37.83) | (1 of 1) | (1 of 1) | |||
7 | 100% | 32.13 | 100% | 33.33 | 100% | 29.16 | 100% | 28.49 |
(8 of 8) | (27.11–36.57) | (8 of 8) | (29.50–35.34) | (1 of 1) | (1 of 1) | |||
9 | 88% | 34.14 | 88% | 33.23 | 100% | 33.78 | 100% | 35.37 |
(7 of 8) | (29.79–39.40) | (7 of 8) | (27.64–36.46) | (1 of 1) | (1 of 1) | |||
11 | 100% | 36.31 | 88% | 34.02 | 100% | 32.90 | 100% | 32.90 |
(8 of 8) | (33.80–39.97) | (7 of 8) | (33.01–37.02) | (1 of 1) | (1 of 1) | |||
16 | 88% | 34.69 | 75% | 35.35 | 100% | 35.79 | 100% | 33.41 |
(7 of 8) | (32.81–39.42) | (6 of 8) | (33.64–37.59) | (1 of 1) | (1 of 1) | |||
21 | 88% | 36.49 | 25% | 38.53 | 100% | 32.66 | 100% | 35.75 |
(7 of 8) | (34.67–38.20) | (2 of 8) | (38.08–38.97) | (1 of 1) | (1 of 1) | |||
25 | 75% | 35.63 | 100% | 35.99 | 100% | 35.89 | 100% | 34.00 |
(6 of 8) | (34.30–37.77) | (8 of 8) | (33.03–39.74) | (1 of 1) | (1 of 1) |
a wks, Age in weeks of pigs sampled. b N, Number of samples tested by RT-qPCR. c Cq, Quantification cycle.