Table 2.
Identified differentially expressed long non-coding RNAs (lncRNAs) (DElncRNAs) in the Rice black-streaked dwarf virus (RBSDV)-infected rice plants.
| Gene ID | Length | log2Ratio (RBSDV/MOCK) |
Up-Down-Regulation (RBSDV/MOCK) |
p-Value | FDR | Chromosome Location |
|---|---|---|---|---|---|---|
| TCONS_00081336 | 4448 | 7.86 | up | 3.21 × 10−4 | 2.14 × 10−2 | chr7 |
| TCONS_00009514 | 714 | 7.62 | up | 4.88 × 10−4 | 2.71 × 10−2 | chr1 |
| TCONS_00008316 | 1887 | 6.93 | up | 3.67 × 10−7 | 1.12 × 10−4 | chr1 |
| TCONS_00070703 | 1608 | 3.10 | up | 1.27 × 10−6 | 2.60 × 10−4 | chr8 |
| TCONS_00005781 | 11439 | 3.08 | up | 1.04 × 10−4 | 9.10 × 10−3 | chr1 |
| TCONS_00089479 | 1652 | 3.07 | up | 1.27× 10−6 | 2.60 × 10−4 | chr1 |
| TCONS_00008924 | 1722 | 2.83 | up | 1.86 × 10−4 | 1.52 × 10−2 | chr1 |
| TCONS_00091345 | 4501 | 2.81 | up | 9.69 × 10−5 | 9.10 × 10−3 | chr9 |
| TCONS_00065705 | 430 | 2.65 | up | 1.71 × 10−7 | 6.96 × 10−5 | chr5 |
| TCONS_00005792 | 12346 | 2.64 | up | 2.36 × 10−4 | 1.81 × 10−2 | chr1 |
| TCONS_00010868 | 1028 | 2.63 | up | 3.32 × 10−4 | 2.14 × 10−2 | chr1 |
| TCONS_00056787 | 4596 | 2.48 | up | 1.30 × 10−7 | 6.96 × 10−5 | chr4 |
| TCONS_00059316 | 5727 | 2.28 | up | 3.32 × 10−5 | 3.97 × 10−3 | chr4 |
| TCONS_00059822 | 2929 | 2.24 | up | 4.63 × 10−4 | 2.69 × 10−2 | chr4 |
| TCONS_00059318 | 11526 | 1.95 | up | 2.80 × 10−4 | 2.02 × 10−2 | chr4 |
| TCONS_00009978 | 1177 | 1.89 | up | 4.79 × 10−5 | 4.89 × 10−3 | chr1 |
| TCONS_00011723 | 2453 | 1.58 | up | 3.57 × 10−5 | 3.97 × 10−3 | chr1 |
| TCONS_00024711 | 4310 | −1.71 | down | 2.11 × 10−5 | 2.87 × 10−3 | chr12 |
| TCONS_00030021 | 3026 | −5.76 | down | 3.77 × 10−8 | 4.61 × 10−5 | chr12 |
| TCONS_00049628 | 1917 | −7.12 | down | 4.32 × 10−4 | 2.64 × 10−2 | chr3 |
| TCONS_00040997 | 10059 | −8.28 | down | 1.26 × 10−5 | 1.93 × 10−3 | chr2 |
| TCONS_00074370 | 6771 | −9.22 | down | 9.99 × 10−6 | 1.75 × 10−3 | chr6 |