Table 7.
Overlapping genes among DAGs and Differentially Expressed Genes (DEGs) from the three phenotypic subgroups of ASD and the combined case group.
| Overlap between DAGs and DEGs in Language-Impaired Subgroup (hypergeom. q=0.30) | Overlap between DAGs and DEGs in Intermediate Subgroup (q = 0.35) | Overlap between DAGs and DEGs in Mild Subgroup (q = 7.14 × 10−4) | Overlap between DAGs and DEGs in Combined Case Group (q = 2.31 × 10−4) | ||
|---|---|---|---|---|---|
| ALOX15B | AIM2 | AADAC | LIMS2 | AIM2 | LCN2 |
| CARD14 | ARSA | AMPH | MATK | ASB10 | LHX3 |
| CAV3 | ATP8B1 | APOB | MEP1B | ASCL2 | LYST |
| CCL11 | KCNQ1 | BNC1 | MMP10 | BGN | MAGEA11 |
| COL6A3 | LDHC | C15orf32 | MS4A12 | BMP10 | MAGEA8 |
| CTRB1 | NEFL | C19orf18 | MS4A6A | BMX | MEPE |
| FAM83A | RGS3 | C8B | NKX6-2 | BTNL2 | MS4A12 |
| HIPK4 | SMPD3 | CADPS | NNAT | C14orf39 | MS4A6A |
| HSPB8 | CCDC54 | NR1I3 | C15orf32 | NR1I3 | |
| PSG4 | CDH5 | NR4A1 | CARD14 | NR5A1 | |
| SEMA3B | CEACAM3 | NRXN1 | CCR9 | OR10A4 | |
| WFDC8 | CHI3L1 | NRXN3 | CHRNA1 | OR10H1 | |
| COX4I2 | OR10H1 | CNKSR1 | OR1N1 | ||
| CPA6 | P4HA3 | CYP2C9 | OR3A3 | ||
| DCN | PCDHB7 | CYP4F3 | P4HA3 | ||
| DLK1 | PHYHIP | DEFB126 | PABPC5 | ||
| DNMT3L | RGS12 | EGFL7 | PLAT | ||
| DOCK1 | S100A3 | FBLN1 | PMCHL1 | ||
| EDNRB | SATB1 | FLRT2 | PNLIPRP1 | ||
| FMR1NB | SCARF1 | GALR1 | RASL12 | ||
| FRMPD2 | SCN3B | GATA5 | RGS13 | ||
| FXYD3 | SLC13A5 | GKN1 | RHOJ | ||
| GATA5 | SLC35E4 | GLIS1 | SCGB1D1 | ||
| GIPR | SLC6A11 | GRIK2 | SLC6A11 | ||
| GLIS1 | SPATA3 | GUCA2B | SPATA21 | ||
| GUCA2B | SPINK4 | GUCY2F | SPRR3 | ||
| HBE1 | SPOCK3 | HCRTR1 | SPTB | ||
| IFNA16 | SPTB | IFNA17 | TFAP2B | ||
| IQCF1 | ST6GAL2 | IGSF11 | TRPM5 | ||
| KLHDC7A | SYN3 | IQCF1 | TTLL2 | ||
| KLK3 | SYNE2 | KIF25 | WFDC5 | ||
| KLK9 | TMEM119 | KLK9 | WWP1 | ||
| KRTAP20-1 | TMEM40 | KRT1 | ZBED2 | ||
| LAD1 | TNNI1 | LCE3C | ZDHHC11 | ||
| LCE3C | TRIM16 | ||||
| LCN2 | USH2A | ||||
| LHX3 | ZDHHC11 | ||||
| LILRA5 | ZPLD1 | ||||