Table 2.
Bioinformatic tools for glycopeptide identification.
| Bioinformatic Tools | Glycan Identification Method | Peptide Identification Method |
|---|---|---|
| GlycoWorkbench [78] | MS, MS/MS | MS |
| GlycReSoft [50,79] | LC-MS | LC-MS/MS |
| Byonic [97] | match by glycan mass | ETD, HCD |
| Protein Prospector [98] | match by glycan mass | ETD |
| pGlyco [82,83] | CID | HCD |
| GlycoNovoDB [85] | HCD | HCD |
| GPQuest [80] | HCD | HCD |
| GlycoPeptide Finder (GPFinder) [4] | QTOF-CID | QTOF-CID |
| MAGIC [99] | QTOF-CID | QTOF-CID |
| GlycoMaster DB [100] | HCD | ETD |
| GlycoFinder [101] | low energy HCD | HCD |
| Sweet-Heart [102] | CID | MS3 |
| Sweet-Heart for HCD [103] | CID | HCD |
| GlycoFragWork [104] | CID | ETD |
| pMatchGlyco [105] | match by MS/MS spectra | HCD |
| GlycoPeptideSearch [106,107] | CID | ETD |
| ArMone [108] | CID | HCD |
| GlypID 2.0 [109] | CID | HCD |
| O-O-Search [52] | HCD | HCD |
| AOGP [84] | HCD | HCD |