Table 1. Meta-Data for the Mouse Data Seta.
| Protein.Sample.Names | Custom.Sample.Names | group | batch |
|---|---|---|---|
| Reporter.intensity.corrected.1.TMT1 | NA_T_1 | NA_T | 1 |
| Reporter.intensity.corrected.2.TMT1 | NA_T_2 | NA_T | 1 |
| Reporter.intensity.corrected.3.TMT1 | NA_T_3 | NA_T | 1 |
| Reporter.intensity.corrected.4.TMT1 | NA_1 | NA | 1 |
| Reporter.intensity.corrected.5.TMT1 | NA_2 | NA | 1 |
| Reporter.intensity.corrected.6.TMT1 | NA_3 | NA | 1 |
| Reporter.intensity.corrected.1.TMT2 | S_T_1 | S_T | 2 |
| Reporter.intensity.corrected.2.TMT2 | S_T_2 | S_T | 2 |
| Reporter.intensity.corrected.3.TMT2 | S_T_3 | S_T | 2 |
| Reporter.intensity.corrected.4.TMT2 | S_1 | S | 2 |
| Reporter.intensity.corrected.5.TMT2 | S_2 | S | 2 |
| Reporter.intensity.corrected.6.TMT2 | S_3 | S | 2 |
a
“Protein.Sample.Names” care automatically generated from the proteinGroups file. “Custom.Sample.Names” is optional and replaces protein sample names when provided (needs to be a unique name). “Group” specifies individual treatment groups. “Batch” is optional and indicates the batch for each sample.