Table 3. Meta-Data for the Spiked-in Data Seta.
| Protein.Sample.Names | Custom.Sample.Names | group | batch |
|---|---|---|---|
| Intensity.12500amol_R1 | 12500amol_R1 | 12500 | 1 |
| Intensity.12500amol_R2 | 12500amol_R2 | 12500 | 1 |
| Intensity.12500amol_R3 | 12500amol_R3 | 12500 | 1 |
| Intensity.125amol_R1 | 125amol_R1 | 125 | 1 |
| Intensity.125amol_R2 | 125amol_R2 | 125 | 1 |
| Intensity.125amol_R3 | 125amol_R3 | 125 | 1 |
| Intensity.25000amol_R1 | 25000amol_R1 | 25000 | 1 |
| Intensity.25000amol_R2 | 25000amol_R2 | 25000 | 1 |
| Intensity.25000amol_R3 | 25000amol_R3 | 25000 | 1 |
| Intensity.2500amol_R1 | 2500amol_R1 | 2500 | 1 |
| Intensity.2500amol_R2 | 2500amol_R2 | 2500 | 1 |
| Intensity.2500amol_R3 | 2500amol_R3 | 2500 | 1 |
| Intensity.250amol_R1 | 250amol_R1 | 250 | 1 |
| Intensity.250amol_R2 | 250amol_R2 | 250 | 1 |
| Intensity.250amol_R3 | 250amol_R3 | 250 | 1 |
| Intensity.50000amol_R1 | 50000amol_R1 | 50000 | 1 |
| Intensity.50000amol_R2 | 50000amol_R2 | 50000 | 1 |
| Intensity.50000amol_R3 | 50000amol_R3 | 50000 | 1 |
| Intensity.5000amol_R1 | 5000amol_R1 | 5000 | 1 |
| Intensity.5000amol_R2 | 5000amol_R2 | 5000 | 1 |
| Intensity.5000amol_R3 | 5000amol_R3 | 5000 | 1 |
| Intensity.500amol_R1 | 500amol_R1 | 500 | 1 |
| Intensity.500amol_R2 | 500amol_R2 | 500 | 1 |
| Intensity.500amol_R3 | 500amol_R3 | 500 | 1 |
| Intensity.50amol_R1 | 50amol_R1 | 50 | 1 |
| Intensity.50amol_R2 | 50amol_R2 | 50 | 1 |
| Intensity.50amol_R3 | 50amol_R3 | 50 | 1 |
a
“Protein.Sample.Names” are automatically generated from the proteinGroups file. “Custom.Sample.Names” is optional and replaces protein sample names when provided (needs to be a unique name). “Group” specifies individual treatment groups. “Batch” is optional and indicates the batch for each sample.