Table 4.

The predicted binding site for vaccine candidates and their interacting residues using the COFACTOR server.

Protein Name	Cscore LB	PDB Hit	TM-Score	RMSD a	IDEN a	Cov.	BS-Score	Lig. Name	Predicted Binding Site Residues
NP_2126841	0.30	3asoC	0.697	2.53	0.034	0.891	0.94	CDL	24, 35, 112, 116
	0.10	3ag4C	0.696	2.54	0.034	0.891	1.01	CDL	20, 24, 28, 31, 119
	0.08	1ory0	0.952	0.95	0.336	0.975	1.47	III	8, 10, 13, 14, 19, 22, 24, 25, 28, 57, 60, 61, 64, 65, 68, 69, 70, 73, 74, 76, 77, 80, 83, 84, 85, 87, 106, 107, 109, 110, 113, 114, 117, 118, 120, 121
	0.02	2eikC	0.697	2.53	0.034	0.891	0.84	CD	26, 30, 108, 112

Cscore ^LB: Confidence score (Cscore) for the ligand binding (LB). PDB: Protein Data Bank. TM-score: Two Model comparison score. RMSD ^a: Root Mean Square Deviation is the RMSD between residue structurally aligned (a) by TM-align. IDEN ^a: Identity in the structurally aligned (a) region. Cov: Represent the coverage. BS-score: Based on structural similarity. Lig Name: Ligand name. CDL: Cardiolipin.