Table 5.
Recombination regions identified from RDP4 analysis in which SARS-CoV-2 is involved either as major parent or minor parent.
| Number | Begin | End | Recombinant Sequence(s) | Minor Parental Sequence(s) | Major Parental Sequence(s) | RDP p-Value |
|---|---|---|---|---|---|---|
| 1 | 380 | 11,623 | Pangolin-CoV-GX-P4L | Unknown (Bat-SL-CoVZC45) |
SARS-CoV-2 | 1.27 × 10−57 |
| 2 | 7054 | 8258 | Pangolin-CoV-MP789 | Unknown (Bat-SL-CoVZC45) |
SARS-CoV-2 | 1.36 × 10−10 |
| 3 | 9558 | 9947 | Pangolin-CoV-MP789 | Bat-SL-CoVZC45 | SARS-CoV-2 | 2.20 × 10−2 |
| 4 | 14,611 | 15,451 | Pangolin-CoV-MP789 | Unknown (Bat-SL-CoVZC45) |
SARS-CoV-2 | 8.00 × 10−13 |
| 5 | 17,813 | 18,698 | Bat-SL-CoVZC45 | Unknown (Pangolin-CoV-GX-P4L) | SARS-CoV-2 | 9.99 × 10−3 |
| 6 | 19,847 | 19,963 | Pangolin-CoV-MP789 | Pangolin-CoV-GX-P4L | SARS-CoV-2 | 5.09 × 10−9 |
| 7 | 21,563 | 21,904 | Pangolin-CoV-MP789 | Unknown (Pangolin-CoV-GX-P4L) | SARS-CoV-2 | 1.34 × 10−9 |
| 8 | 21,914 | 22,474 | Pangolin-CoV-MP789 | Unknown (Pangolin-CoV-GX-P4L) | SARS-CoV-2 | 3.73 × 10−21 |
| 9 | 22,850 | 23,094 | Bat-CoV-RaTG13 | Unknown (Pangolin-CoV-MP789) | SARS-CoV-2 | 1.70 × 10−16 |
| 10 | 4816 | 5953 | Pangolin-CoV-MP789 | Unknown (Bat-SL-CoVZC45) |
Bat-CoV-RaTG13 | 1.25 × 10−9 |
| SARS-CoV-2 | ||||||
| 11 | 14,042 | 14,607 | Bat-SL-CoVZC45 | Unknown (Pangolin-CoV-GX-P4L) | Pangolin-CoV-MP789 | 2.13 × 10−4 |
| SARS-CoV-2 | ||||||
| Bat-CoV-RaTG13 | ||||||
| 12 | 16,028 | 16,399 | Bat-SL-CoVZC45 | Unknown (Pangolin-CoV-GX-P4L) | Bat-CoV-RaTG13 | 2.07 × 10−4 |
| SARS-CoV-2 | ||||||
| 13 | 21,187 | 22,368 | Bat-SL-CoVZC45 | Pangolin-CoV-MP789 | Bat-CoV-RaTG13 | 1.69 × 10−45 |
| SARS-CoV-2 | ||||||
| 14 | 20,015 | 20,591 | Bat-SL-CoVZC45 | Unknown (Pangolin-CoV-GX-P4L) | Bat-CoV-RaTG13 | 1.42 × 10−7 |
| SARS-CoV-2 | ||||||
| 15 | 22,472 | 22,792 | Pangolin-CoV-GX-P4L | Bat-CoV-RaTG13 | Unknown (Bat-SL-CoVZC45) | 3.91 × 10−4 |
| SARS-CoV-2 |