Skip to main content
. 2020 Sep 21;18(3):e28. doi: 10.5808/GI.2020.18.3.e28

Table 1.

Tools used for the in-silico characterization of hypothetical protein SCO0618

No. Server name Reference  Purpose
1 BLASTp Johnson et al. (2008) [13] Similarity search
2 protBLAST Altschul et al. (1999) [40]
3 Muscle Madeira et al. (2019) [14] Multiple sequence alignment
4 Protparam Gasteiger et al. (2005) [16] Physicochemical characterization
5 Psortb Yu et al. (2010) [18]
6 PSLpred Bhasin et al. (2005) [19] Subcellular localization prediction
7 Cello Yu et al. (2006) [17]
8 SOSUIGramN Imai et al. (2008) [20]
9 TMHMM Moller et al. (2001) [21] Topology prediction
10 HMMTOP Tusnady and Simon (2001) [22]
11 CCTOP Dobson et al. (2015) [23]
12 Motif Kanehisa et al. (2002) [25] Motif discovery
13 Pfam Finn et al. (2015) [26] Family relationship identification
14 Superfamily Wilson et al. (2007) [27] Superfamily search
15 COILS Lupas et al. (1991) [28] Coiled-coil motif identification
16 PFP-FunDSeqE Shen and Chou (2009) [30] Fold recognition
17 Interpro Hunter et al. (2009) [29] Functional classification
18 STRING Szklarczyk et al. (2015) [31] Interaction network analysis
19 PSIPRED McGuffin et al. (2000) [32] Secondary structure prediction
20 SOPMA Geourjon and Deléage (1995) [33]
21 HHpred Zimmermann et al. (2018) [34] Tertiary structure prediction
22 PROCHECK Laskowski et al. (1993) [36]
23 Verify3D Structure verification
24 ERRAT