1 |
BLASTp |
Johnson et al. (2008) [13] |
Similarity search |
2 |
protBLAST |
Altschul et al. (1999) [40] |
|
3 |
Muscle |
Madeira et al. (2019) [14] |
Multiple sequence alignment |
4 |
Protparam |
Gasteiger et al. (2005) [16] |
Physicochemical characterization |
5 |
Psortb |
Yu et al. (2010) [18] |
|
6 |
PSLpred |
Bhasin et al. (2005) [19] |
Subcellular localization prediction |
7 |
Cello |
Yu et al. (2006) [17] |
|
8 |
SOSUIGramN |
Imai et al. (2008) [20] |
|
9 |
TMHMM |
Moller et al. (2001) [21] |
Topology prediction |
10 |
HMMTOP |
Tusnady and Simon (2001) [22] |
|
11 |
CCTOP |
Dobson et al. (2015) [23] |
|
12 |
Motif |
Kanehisa et al. (2002) [25] |
Motif discovery |
13 |
Pfam |
Finn et al. (2015) [26] |
Family relationship identification |
14 |
Superfamily |
Wilson et al. (2007) [27] |
Superfamily search |
15 |
COILS |
Lupas et al. (1991) [28] |
Coiled-coil motif identification |
16 |
PFP-FunDSeqE |
Shen and Chou (2009) [30] |
Fold recognition |
17 |
Interpro |
Hunter et al. (2009) [29] |
Functional classification |
18 |
STRING |
Szklarczyk et al. (2015) [31] |
Interaction network analysis |
19 |
PSIPRED |
McGuffin et al. (2000) [32] |
Secondary structure prediction |
20 |
SOPMA |
Geourjon and Deléage (1995) [33] |
|
21 |
HHpred |
Zimmermann et al. (2018) [34] |
Tertiary structure prediction |
22 |
PROCHECK |
Laskowski et al. (1993) [36] |
|
23 |
Verify3D |
|
Structure verification |
24 |
ERRAT |
|
|