Table 3. List of five candidate genes identified in four genomic regions.
S. No | Genomic region | QTL | Gene Locus ID | Start Position (bp) | End Position (bp) | Putative Function (RAP-DB annotation) |
---|---|---|---|---|---|---|
1 | Genomic region 1.2 | q1Dcf1.2* | Os01t0743200 | 31056061 | 31058475 | Similar to Pectinesterase. |
q1Dcs1.2* | ||||||
q30Dcf1.2* | ||||||
q30Dcs1.2** | ||||||
qRdcs1.2* | ||||||
2 | Genomic region 2.2 | q1Dcf2.2* | Os02t0511100 | 18277595 | 18286711 | Similar to Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed. |
q1Dcs2.2* | ||||||
q30Dcf2.2* | ||||||
q30Dcs2.2** | ||||||
qRdcs2.2* | ||||||
3 | Genomic region 6.1 | q1Dcf6.1** | Os06t0590301 | 23181263 | 23184271 | Similar to short-chain dehydrogenase/reductase (SDR) family protein. |
q30Dcf6.1** | ||||||
qRdcf6.1* | ||||||
Os06t0653100 | 26752554 | 26755222 | Senescence-associated protein 5. | |||
4 | Genomic region 10.3 | q1Dcf10.3* | Os10t0419600 | 14763501 | 14765095 | Chlorophyllase family protein. |
q1Dcs10.3* | ||||||
q30Dcf10.3** | ||||||
q30Dcs10.3* |
* QTL expressed in one season;
** QTL expressed in both season