Table 8. Interaction similarity scores of the selected HTL epitopes using GalexyPepDock flexible docking server.

Protein	Epitope	DRB1-0101	DRB1-0301	DRB1-0401	DRB1-1101	DRB1- 1501	DRB5-0101	Average*
S	NIDGYFKIYSKHTPINLVRDLPQGFS	139	146	132	132	132	132	135.5
	LKSFTVEKGIYQTSNFRVQPT	124	126	124	126	124	126	125.0
	YQTSNFRVQPTESIVRFP	118	105	118	118	108	118	114.1
	TQQLIRAAEIRASANLAATKMS	133	123	113	123	113	113	119.6
	FTRGVYYPDKVFRSSVLHSTQD	135	133	135	133	135	135	134.3
	PHGVVFLHVTYVPAQEKN	170	128	128	128	132	128	135.6
	SQSIIAYTMSLGAENS	141	129	141	141	141	141	139.0
	NFSQILPDPSKPSKRSF	148	126	126	126	126	126	129.6
	YEPQIITTDNTFVSGNC	123	116	120	116	123	120	119.6
	TQSLLIVNNATNVVIKV	131	131	131	130	130	131	130.6
M	RYRIGNYKLNTDHSSSSDNI	117	113	117	117	117	117	116.3
	SRTLSYYKLGASQRVAGDS	124	124	124	128	124	128	125.3
	RSMWSFNPETNILLNVPLHGTI	169	169	169	139	169	169	164.0
	DLPKEITVATSRTLSYYKL	137	124	125	137	137	137	132.8
N	GTWLTYTGAIKLDDKDPNFKDQ	137	131	137	137	137	131	135
	NKDGIIWVATEGALNTPK	136	133	131	136	131	136	133.8
	KDPNFKDQVILLNKHIDAYK	127	134	127	127	134	127	129.3
	NTASWFTALTQHGKED	137	137	137	137	149	137	139.0
	LPKGFYAEGSRGGSQ	107	107	107	105	105	107	106.3
	KQLQQSMSSADSTQA	142	118	118	118	118	118	122.0

* Higher rates show better quality of modeling